ViewGene
Locus Name:
GeneID:
Location:

GeneID:3735
TrivialName: PA14_38380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38380
PAO1 Ortholog Locus:PA2020
Sequence Length:633
Protein Length:210
Start: 3421521
Stop: 3420889
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05408.1|AE004628_6 (AE004628) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 208/210 (99%), Positives = 209/210 (99%)
Sequence:
GTGGCCAGGAAAACCAAAGAGGAATCCCAGAAAACCCGCGATGGCATACTCGATGCCGCCGAGCGGGTTTTC
CTGGAAAAGGGCGTGGGCACCACTGCCATGGCCGACCTGGCGGACGCCGCCGGGGTTTCTCGCGGTGCGGTC
TACGGCCACTACAAGAACAAGATCGAGGTCTGTCTGGCGATGTGCGACCGCGCCTTCGGCCAGATCGAGGTA
CCCGATGAAAACGCCAGGGTGCCGGCGCTGGACATCCTCCTGCGCGCCGGCATGGGCTTTCTCCGCCAGTGC
TGCGAACCCGGTTCGGTGCAGCGGGTGCTGGAGATCCTCTACCTCAAGTGCGAACGCAGCGACGAGAACGAG
CCGCTGCTGCGCCGCCGCGAGCTGCTCGAGAAGCAGGGGCAACGCTTCGGCCGACGGCAGATCCGCCGGGCG
GTGGAGCGCGGCGAACTGCCGGCGCGGCTGGACGTCGAGCTGGCCAGCATCTATCTGCAATCGCTGTGGGAC
GGCATCTGCGGCACCCTGGCCTGGACCGAGCGCTTGCGCGACGATCCCTGGAGCCGCGCCGAACGCATGTTC
CGCGCCGGCCTCGATAGCCTGCGCAGTTCTCCCTACCTCTTGCTGGCGGACGCCTGA
Translation:
MARKTKEESQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFGQIEV
PDENARVPALDILLRAGMGFLRQCCEPGSVQRVLEILYLKCERSDENEPLLRRRELLEKQGQRFGRRQIRRA
VERGELPARLDVELASIYLQSLWDGICGTLAWTERLRDDPWSRAERMFRAGLDSLRSSPYLLLADA*
AnnotationID:3742GeneID:3735
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 20:08:46
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:amrR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC27752.1| (AF072887) regulator AmrR [Burkholderia pseudomallei]
          Length = 187

 Score =  197 bits (501), Expect = 3e-50
 Identities = 106/173 (61%), Positives = 128/173 (73%), Gaps = 1/173 (0%)

>emb|CAD85025.1| (BX321859) Bacterial regulatory proteins, TetR family [Nitrosomonas
           europaea ATCC 19718]
          Length = 204

 Score =  186 bits (471), Expect = 1e-46
 Identities = 101/201 (50%), Positives = 130/201 (64%)






 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  99.0% aligned
Score = 63.1 bits (151), Expect = 3e-11






   
Genomic Context:






   
Comment:


















    ReferenceID:14907




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24615




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32694




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3735_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3735
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5948
                           PA2020_tr
                           translation of PA2020
                           210
                           99.04
                           99.52
                           0
                           1068.0
     

     
     
166224
                           gb|AAG05408.1|AE004628_6
                           (AE004628) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           210
                           98.57
                           99.52
                           0
                           1065.0
     

     
     
166225
                           gb|AAF14521.1|AF147719_1
                           (AF147719) transcriptional regulator; AmrR [Pseudomonas aeruginosa]
                           210
                           98.57
                           99.52
                           0
                           1065.0
     

     
     
166226
                           gb|AAD22453.1|AF116283_1
                           (AF116283) putative multidrug efflux pump regulator [Pseudomonas aeruginosa]
                           210
                           84.28
                           84.28
                           33
                           918.0
     

     
     
166227
                           gb|AAC64520.1|
                           (AF073776) MexZ [Pseudomonas aeruginosa]
                           210
                           83.33
                           83.80
                           33
                           908.0
     

     






      

          
GC ORFID: 46737How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2020Glimmer Score: 

          
Start: 1532389Stop: 1533021

          
Length: 633


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2020 translation of PA2020Homolog Bit Score 416.0

          
Other Homologs:  t_PA2020 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCCAGGAAAACCAAAGAGGAATCCCAGAAAACCCGCGATGGCATACTCGATGCCGCCGAGCGGGTTTTC 
CTGGAAAAGGGCGTGGGCACCACTGCCATGGCCGACCTGGCGGACGCCGCCGGGGTTTCTCGCGGTGCGGTC 
TACGGCCACTACAAGAACAAGATCGAGGTCTGTCTGGCGATGTGCGACCGCGCCTTCGGCCAGATCGAGGTA 
CCCGATGAAAACGCCAGGGTGCCGGCGCTGGACATCCTCCTGCGCGCCGGCATGGGCTTTCTCCGCCAGTGC 
TGCGAACCCGGTTCGGTGCAGCGGGTGCTGGAGATCCTCTACCTCAAGTGCGAACGCAGCGACGAGAACGAG 
CCGCTGCTGCGCCGCCGCGAGCTGCTCGAGAAGCAGGGGCAACGCTTCGGCCGACGGCAGATCCGCCGGGCG 
GTGGAGCGCGGCGAACTGCCGGCGCGGCTGGACGTCGAGCTGGCCAGCATCTATCTGCAATCGCTGTGGGAC 
GGCATCTGCGGCACCCTGGCCTGGACCGAGCGCTTGCGCGACGATCCCTGGAGCCGCGCCGAACGCATGTTC 
CGCGCCGGCCTCGATAGCCTGCGCAGTTCTCCCTACCTCTTGCTGGCGGACGCCTGA