ViewGene

Locus Name:
GeneID:
Location:

GeneID:3733
TrivialName: PA14_51600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51600
PAO1 Ortholog Locus:PA0981
Sequence Length:624
Protein Length:207
Start: 4587288
Stop: 4586665
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82952.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 207/207 (100%), Positives = 207/207 (100%)
Sequence:
ATGAAAAAATCACTTGTTATGTCGGCTGTGCTTTTGGTGGCTAGCAATTTCGCGTGTGCTGATGAGGGCTCA
AATGATGGAAGTGAGATATGTCGGGCGCAGGGTGGAGTTGAAATAACAAGTCTGGGGGAAGTCTCAAAGGGT
GTGGATGTTGAAGATGTTGTAGTTTGTTCGATTCTTCCAAGTAATATGAAGTCGAGTCAAAGAGCGCCTACA
CTCCCTCCTCTGCAAAGGATGATCATTTCGGCAATGCCTTCACCAGGAACGGTCACTGTTTCTGCCAGCGGA
GATAGGAAATTTACAACATCTTGCCGGGCAAATCTTTATGCTCCACGTTATGCCAATTTCTATCCAGACGGT
GTTAGCAGGGGAACATCAGATCTACGATGTGTTGGTTACAATACACCCGGGAATTCATCTCAAGGGTGTAAT
GTGTCATGGGACGGCCCGACCGACATTCAATTGGGTGTTGAGCCATATGGCGGATCTGTTGTTGTAAACTAC
AGTTGCACTGCATTCAAAACAACGATTCCAGTGATAATGAGCTACAGTTATCGTGATGGGCGGGCAGTGTAT
GGCGAGGTCCAGAATGTGTCAGGAATAATAAATGTGGTTTTGAACTAA
Translation:
MKKSLVMSAVLLVASNFACADEGSNDGSEICRAQGGVEITSLGEVSKGVDVEDVVVCSILPSNMKSSQRAPT
LPPLQRMIISAMPSPGTVTVSASGDRKFTTSCRANLYAPRYANFYPDGVSRGTSDLRCVGYNTPGNSSQGCN
VSWDGPTDIQLGVEPYGGSVVVNYSCTAFKTTIPVIMSYSYRDGRAVYGEVQNVSGIINVVLN*
AnnotationID:3740GeneID:3733
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:13
Gene Name:RS07
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0981
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7469
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24611
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3733

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
166221 gb|AAP82952.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa] 207 99.99 99.99 0 1072.0
5946 PA0981_tr translation of PA0981 207 99.03 99.03 0 1059.0
166222 gb|AAG04370.1|AE004531_7 (AE004531) hypothetical protein PA0981 [Pseudomonas aeruginosa PAO1] 207 99.03 99.03 0 1059.0
GC ORFID: 46735How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RS07Glimmer Score:
Start: 366619Stop: 367242
Length: 624
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_RS07 207 Homolog: PA0981 / Hypothetical protein / P. aeruginosa / PAO1 (AAG04370) translation of RS07Homolog Bit Score 417.0
Other Homologs: t_PA0981 (ORF: BLASTX 412.0)
GC ORF Sequence
ATGAAAAAATCACTTGTTATGTCGGCTGTGCTTTTGGTGGCTAGCAATTTCGCGTGTGCTGATGAGGGCTCA
AATGATGGAAGTGAGATATGTCGGGCGCAGGGTGGAGTTGAAATAACAAGTCTGGGGGAAGTCTCAAAGGGT
GTGGATGTTGAAGATGTTGTAGTTTGTTCGATTCTTCCAAGTAATATGAAGTCGAGTCAAAGAGCGCCTACA
CTCCCTCCTCTGCAAAGGATGATCATTTCGGCAATGCCTTCACCAGGAACGGTCACTGTTTCTGCCAGCGGA
GATAGGAAATTTACAACATCTTGCCGGGCAAATCTTTATGCTCCACGTTATGCCAATTTCTATCCAGACGGT
GTTAGCAGGGGAACATCAGATCTACGATGTGTTGGTTACAATACACCCGGGAATTCATCTCAAGGGTGTAAT
GTGTCATGGGACGGCCCGACCGACATTCAATTGGGTGTTGAGCCATATGGCGGATCTGTTGTTGTAAACTAC
AGTTGCACTGCATTCAAAACAACGATTCCAGTGATAATGAGCTACAGTTATCGTGATGGGCGGGCAGTGTAT
GGCGAGGTCCAGAATGTGTCAGGAATAATAAATGTGGTTTTGAACTAA