ViewGene
Locus Name:
GeneID:
Location:

GeneID:3732
TrivialName: PA14_35820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35820
PAO1 Ortholog Locus:
Sequence Length:972
Protein Length:323
Start: 3188081
Stop: 3187110
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC41569.1| (AB088420) cointegrase [Pseudomonas resinovorans]
Identities = 276/323 (85%), Positives = 292/323 (90%)
Sequence:
ATGAAGGACGTCGAGCGCTACCTGCAAGCCGGCACGCGGGAAAACACCCGGCGTAGCTACCAGTCGGCCGTC
GAACATTTCGAGGTGACCTGGGGCGGCTTCTTGCCGGCCACGAGTGACTCCATCGTGCGTTACCTGGTGGAC
TACGCCGACACGCTGAGCCTCAACACGCTAAAGCAGCGCCTCGCCGCCCTCGCGCAGTGGCATATCAGGCAC
GGCTTCCCCGATCCCACCAAGACCCCGACCGTACACCAGGTACTGAAGGGAATTCGCACCCTGCACCCGAGC
CAGACAAAGCAGGCCGCGCCGCTGCAATTACAGCATCTGGAGCATGCGGTTGAGTGGTTGGAGCAGGAGGCT
ATGTGTCTGTTTCAAGCCGAAGACCTGGCGGGATATTTGCGCTGTCGGCGGGATACGGCATTGCTACTAATC
GGCTTCTGGCGAGGCTTTCGTAGCGATGAACTGTGCCGCTTGCAGGTGGAGCACATTCAAGCCGAAGCCGGT
GCTGGCATGACGCTGTTTTTGCCTTGGAGCAAGGGTGACCGGGACAACCTTGGCACCACTCACTACGTACCT
GCGCTGAGGCGGCTGTGCCCAGTACAGGCCTATCTCGACTGGATCGGTGCAGCAGGGATTGCTCGAGGGATG
GTTTTTCGTCGGCTGGACCGTTGGGGCAACTTGAACGAGGCTGGCTTGAATCCTGGCAGTCTGATCGTCCTA
CTGCGGCAGATACTCCAGCGTGCGGGGATCCAGGCTGACCTTTATACCAGCCACTCATTGCGTCGAGGCTTC
GCCACCTGGGCCACGGCCAATGGCTGGGACATTAAGGCGTTAATGACCTACGTGGGGTGGAAGGACATCAAA
TCGGCGATGCGCTACATCGACCCTGCCATCTCCTTTGGCGGCCTCGCTGCGAGGCCTGCTCTCGAACTAAAT
GCCAGCACTTTGACTCAAGTGCCAGCTTCTCACTAA
Translation:
MKDVERYLQAGTRENTRRSYQSAVEHFEVTWGGFLPATSDSIVRYLVDYADTLSLNTLKQRLAALAQWHIRH
GFPDPTKTPTVHQVLKGIRTLHPSQTKQAAPLQLQHLEHAVEWLEQEAMCLFQAEDLAGYLRCRRDTALLLI
GFWRGFRSDELCRLQVEHIQAEAGAGMTLFLPWSKGDRDNLGTTHYVPALRRLCPVQAYLDWIGAAGIARGM
VFRRLDRWGNLNEAGLNPGSLIVLLRQILQRAGIQADLYTSHSLRRGFATWATANGWDIKALMTYVGWKDIK
SAMRYIDPAISFGGLAARPALELNASTLTQVPASH*
AnnotationID:3739GeneID:3732
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:24
Gene Name:tnpS
Confidence Code:2
GeneProduct:Cointegrate resolution protein S
Cell Localization:()
Synonyms:resS
Cell Localization Confidence Code:5
MolecularFunction:Cointegrase
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00799
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|33114141|gb|AAP94698.1|  putative cointegrate resolution protein S [Pseudomonas aeruginosa]
     Length=323
     Score =  661 bits (1706),  Expect = 0.0
     Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%)

gi|26106129|dbj|BAC41569.1|  cointegrase [Pseudomonas resinovorans]
     Length=323
     Score =  563 bits (1452),  Expect = 2e-159
     Identities = 276/323 (85%), Positives = 292/323 (90%), Gaps = 0/323 (0%)

gi|5524530|gb|AAD44277.1|  putative cointegrate resolution protein S [Pseudomonas putida]
gi|18157514|dbj|BAB83832.1|  TnpS protein [Pseudomonas putida]
     Length=323
     Score =  553 bits (1425),  Expect = 3e-156
     Identities = 272/323 (84%), Positives = 294/323 (91%), Gaps = 0/323 (0%)








 
Structural Features:
cd00799, INT_Cre, Cre recombinase, C-terminal catalytic domain.
             CD-Length = 287 residues,  99.7% aligned
             Score =  234 bits (599), Expect = 9e-63






   
Genomic Context:






   
Comment:


















    ReferenceID:7467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24609




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3732
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
166202
                           gb|AAP94698.1|
                           (AY258138) putative cointegrate resolution protein S [Pseudomonas aeruginosa]
                           323
                           99.99
                           99.99
                           0
                           1706.0
     

     
     
166203
                           dbj|BAC41569.1|
                           (AB088420) cointegrase [Pseudomonas resinovorans]
                           323
                           85.44
                           90.40
                           0
                           1452.0
     

     
     
166204
                           gb|AAN68589.1|AE016490_6
                           (AE016785) Tn4652, cointegrate resolution protein S [Pseudomonas putida KT2440]
                           323
                           84.21
                           91.02
                           0
                           1425.0
     

     
     
166205
                           gb|AAD44277.1|AF151431_6
                           (AF151431) putative cointegrate resolution protein S [Pseudomonas putida]
                           323
                           84.21
                           91.02
                           0
                           1425.0
     

     
     
166206
                           dbj|BAB83832.1|
                           (AB077820) TnpS protein [Pseudomonas putida]
                           323
                           84.21
                           91.02
                           0
                           1425.0
     

     






      

          
GC ORFID: 46734How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold7_revised_gene7273Glimmer Score: 

          
Start: 1765835Stop: 1766806

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold7_revised_gene7273 related to: gi|18150907|ref|NP_542844.1| (NC_003350) putative cointegrate resolution protein S [Pseudomonas putida] emb|CAC86784.1| (AJ344068) putative cointegrate resolution protein S [Pseudomonas putida]Homolog Bit Score 417.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7273 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGACGTCGAGCGCTACCTGCAAGCCGGCACGCGGGAAAACACCCGGCGTAGCTACCAGTCGGCCGTC 
GAACATTTCGAGGTGACCTGGGGCGGCTTCTTGCCGGCCACGAGTGACTCCATCGTGCGTTACCTGGTGGAC 
TACGCCGACACGCTGAGCCTCAACACGCTAAAGCAGCGCCTCGCCGCCCTCGCGCAGTGGCATATCAGGCAC 
GGCTTCCCCGATCCCACCAAGACCCCGACCGTACACCAGGTACTGAAGGGAATTCGCACCCTGCACCCGAGC 
CAGACAAAGCAGGCCGCGCCGCTGCAATTACAGCATCTGGAGCATGCGGTTGAGTGGTTGGAGCAGGAGGCT 
ATGTGTCTGTTTCAAGCCGAAGACCTGGCGGGATATTTGCGCTGTCGGCGGGATACGGCATTGCTACTAATC 
GGCTTCTGGCGAGGCTTTCGTAGCGATGAACTGTGCCGCTTGCAGGTGGAGCACATTCAAGCCGAAGCCGGT 
GCTGGCATGACGCTGTTTTTGCCTTGGAGCAAGGGTGACCGGGACAACCTTGGCACCACTCACTACGTACCT 
GCGCTGAGGCGGCTGTGCCCAGTACAGGCCTATCTCGACTGGATCGGTGCAGCAGGGATTGCTCGAGGGATG 
GTTTTTCGTCGGCTGGACCGTTGGGGCAACTTGAACGAGGCTGGCTTGAATCCTGGCAGTCTGATCGTCCTA 
CTGCGGCAGATACTCCAGCGTGCGGGGATCCAGGCTGACCTTTATACCAGCCACTCATTGCGTCGAGGCTTC 
GCCACCTGGGCCACGGCCAATGGCTGGGACATTAAGGCGTTAATGACCTACGTGGGGTGGAAGGACATCAAA 
TCGGCGATGCGCTACATCGACCCTGCCATCTCCTTTGGCGGCCTCGCTGCGAGGCCTGCTCTCGAACTAAAT 
GCCAGCACTTTGACTCAAGTGCCAGCTTCTCACTAA