ViewGene
Locus Name:
GeneID:
Location:

GeneID:3730
TrivialName: PA14_11120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11120
PAO1 Ortholog Locus:PA4080
Sequence Length:645
Protein Length:214
Start: 966785
Stop: 967429
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07467.1|AE004824_2 (AE004824) probable response regulator [Pseudomonas aeruginosa PAO1]
Identities = 213/214 (99%), Positives = 214/214 (100%)
Sequence:
ATGTCCCTACATCGCATTCGCGTAATGGTTGCGGATGATCATCCCGCCATTTCGCTGGGTATTTCCTACGAA
CTGAGTCAGTGCGGTTCTTTGGAGATGCTCGGTCAAGTTTCCAATTCTACCGAGTTGATCGGCCGGCTCGAC
GAAGGCGACTGCGATGTCGTTATCGTCGACTATACGATGCCGGGCGGGAAATATGGCGATGGACTGGCATTG
TTGTCATTGCTGCGACGACGTTATCCGCATCTGCAATTGGTCGTCTTTACCATGCTGAACAATCCGGGTCTT
ATCCGGGCCATTCTCAAGCAGGGTATCAATTGCATCCTCAGCAAGTCCGACTCGACCAGTCACCTGCTGGCG
GCGGTGAGCGCGGCCTATTCGCGAAACCAGTATTTCTCGCCGTCGATCAGGGACATCTTCGTCAACCAGGTG
CTTTCCTCGCACAACGAACGGCTGACGCCCCGGGAGGCGGAAATCGTCCGTCTGTTCGGCTCCGGACTGACC
ATCACCGAAATCGCCGAGCGCTCGCATCGCAGCGTGCAGACCATCAGTACGCAGAAGGTCAGTGCCATGAAG
AAGCTCGGCATCAAGCGCGATGCCGACCTCATCAGGTATGCGGCCGAGGGCTATTGCCGGATGCCCTGA
Translation:
MSLHRIRVMVADDHPAISLGISYELSQCGSLEMLGQVSNSTELIGRLDEGDCDVVIVDYTMPGGKYGDGLAL
LSLLRRRYPHLQLVVFTMLNNPGLIRAILKQGINCILSKSDSTSHLLAAVSAAYSRNQYFSPSIRDIFVNQV
LSSHNERLTPREAEIVRLFGSGLTITEIAERSHRSVQTISTQKVSAMKKLGIKRDADLIRYAAEGYCRMP*
AnnotationID:3737GeneID:3730
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 07:07:23
Gene Name:
Confidence Code:3
GeneProduct:putative regulator of capsule synthesis
Cell Localization:()
Synonyms:rcsB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL25250.1| (AY059953) regulator of capsule synthesis B [Klebsiella pneumoniae]
          Length = 216

 Score =  154 bits (389), Expect = 3e-37
 Identities = 79/205 (38%), Positives = 131/205 (63%), Gaps = 3/205 (1%)

>gb|AAM86521.1|AE013898_4 (AE013898) positive response regulator for colanic capsule
           biosynthesis [Yersinia pestis KIM]
          Length = 217

 Score =  153 bits (387), Expect = 6e-37
 Identities = 76/204 (37%), Positives = 128/204 (62%), Gaps = 1/204 (0%)

>gb|AAG57352.1|AE005453_9 (AE005453) positive response regulator for colanic capsule
           biosynthesis, (sensor, RcsC) [Escherichia coli O157:H7
           EDL933]
          Length = 216

 Score =  153 bits (387), Expect = 6e-37
 Identities = 78/205 (38%), Positives = 130/205 (63%), Gaps = 3/205 (1%)






 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain 
and an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  97.2% aligned
Score =  155 bits (392), Expect = 5e-39
Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 8/208 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7463




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24605




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36827




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3730_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3730
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5943
                           PA4080_tr
                           translation of PA4080
                           214
                           99.53
                           99.99
                           0
                           1072.0
     

     
     
166156
                           gb|AAG07467.1|AE004824_2
                           (AE004824) probable response regulator [Pseudomonas aeruginosa PAO1]
                           214
                           99.53
                           99.99
                           0
                           1072.0
     

     
     
5944
                           PA3714_tr
                           translation of PA3714
                           222
                           39.63
                           56.75
                           17
                           373.0
     

     
     
166157
                           gb|AAG07101.1|AE004790_6
                           (AE004790) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           222
                           39.63
                           56.75
                           17
                           373.0
     

     






      

          
GC ORFID: 46732How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4080Glimmer Score: 

          
Start: 3987152Stop: 3986508

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4080 translation of PA4080Homolog Bit Score 417.0

          
Other Homologs:  t_PA3714 (ORF: BLASTX 147.0), t_PA4080 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTACATCGCATTCGCGTAATGGTTGCGGATGATCATCCCGCCATTTCGCTGGGTATTTCCTACGAA 
CTGAGTCAGTGCGGTTCTTTGGAGATGCTCGGTCAAGTTTCCAATTCTACCGAGTTGATCGGCCGGCTCGAC 
GAAGGCGACTGCGATGTCGTTATCGTCGACTATACGATGCCGGGCGGGAAATATGGCGATGGACTGGCATTG 
TTGTCATTGCTGCGACGACGTTATCCGCATCTGCAATTGGTCGTCTTTACCATGCTGAACAATCCGGGTCTT 
ATCCGGGCCATTCTCAAGCAGGGTATCAATTGCATCCTCAGCAAGTCCGACTCGACCAGTCACCTGCTGGCG 
GCGGTGAGCGCGGCCTATTCGCGAAACCAGTATTTCTCGCCGTCGATCAGGGACATCTTCGTCAACCAGGTG 
CTTTCCTCGCACAACGAACGGCTGACGCCCCGGGAGGCGGAAATCGTCCGTCTGTTCGGCTCCGGACTGACC 
ATCACCGAAATCGCCGAGCGCTCGCATCGCAGCGTGCAGACCATCAGTACGCAGAAGGTCAGTGCCATGAAG 
AAGCTCGGCATCAAGCGCGATGCCGACCTCATCAGGTATGCGGCCGAGGGCTATTGCCGGATGCCCTGA