ViewGene
Locus Name:
GeneID:
Location:

GeneID:373
TrivialName: PA14_12980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12980
PAO1 Ortholog Locus:PA3934
Sequence Length:2037
Protein Length:678
Start: 1111237
Stop: 1113273
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07321.1|AE004811_4 (AE004811) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 676/678 (99%), Positives = 677/678 (99%)
Sequence:
ATGCAAGAACGCATCCCGGATGAGCTGACCCTGCCAGAGCTCACCCTGCGTGGCCTGATCCTCGGTGCGCTG
ATCACCGTGGTCTTCACCGCCTCCAACGTCTACCTCGGTCTGAAGGTCGGCCTGACCTTCGCCTCGTCGATC
CCGGCGGCGGTGATCTCGATGGCCGTCCTGCGCTACTTCTCCGGCGCCAACATCCTCGAGAACAACATGGTG
CAGACCCAGGCCTCGGCGGCCGGCACTCTGTCCTCGATCATCTTCATCCTTCCCGGCCTGCTGATGATCGGC
TACTGGAGTGGCTTCCCGTTCTGGCAGACCGCGGCGATCTGCTCCATCGGCGGCATTCTCGGGGTGCTCTAT
ACCATTCCGCTGCGCCGGGTGATGGTGGTGCAGAGCGAACTGCCGTATCCGGAAGGGGTGGCGGCGGCGGAA
ATCCTCCGGGTCGGCAGCGACGGCGCCGAGGACGAGGAAGACGCCCGCGCGCCGCGTGCCGCCGGTAACGCG
CCGGGGCTCTACGACATCCTCGGCGGCGGCCTGGTGGCGGCGCTGTTCAGCCTCTGGAGCAGCGGCTTCAAG
GTTCTCGCCGAAGGCTTCAGCGTCTGGCTCAGTGCCGGGCAGGCGGCGTTCCGCCTTTCCACCGGTTTTTCC
CTGGCTCTGGTCGGTGCCGGCTACCTGATGGGCATCACCGCCGGCATCGCGATCCTCATCGGCGTGGTGATC
TCCTGGGGCGTCGCGGTGCCGTTGCTGACCGTCAACAGCGTGCCGGCCGACGGCCAGAGCCTGTCGGACCTG
GCCACCCAACTGTGGAGTTCGCAGGTGCGCTTCCTCGGCGCCGGCACCATCGGCGTGGCCGCGCTGTGGACC
CTGGCGACCCTGTTCAAGCCGATGGTGCGGGGCGTCTGGGCCTCCCTCGGGGCAGTGCGCGGCAATAGCCAG
GCGAGCAGCCTGCGCACCGAGCTGGACATGCCGGCCAAGTGGATCCTGCTGATCGCCGGGATACTGCTGGTC
TCGCTGTTCGTGGTCTTCAGCCACTTCCTCGGTGCCGCCGCGCCGGACATGGCCAGCCCGCAGTTCTGGAGC
CTGGTGGCGGTATGCGTGGTGTTCGCCTTCTTCTTCGGCTTCCTGATCGCCGCCGCCTGCGGCTACATGGCC
GGCCTGGTCGGTTCGTCGAGCAGTCCGATCTCGGGGATCGGAATCATCGCGGTCATCCTGGTGTCGTTGCTG
ATACTCGGCTTCGGCAGCATCGAGGGCGGCCTGCTGGACCGCCAGAACGGCAAGCTGGCGATCGCCCTGGCG
CTGTTCACCACCTCGGTGGTGCTGGCCATCGCGGCGATCTCCAACGACAACCTGCAAGACCTCAAGACCGGC
TACCTGGTCGGCGCCACGCCCTGGCGCCAGCAGGTCGCGCTGATCGTCGGCTGCATCGTCGGCGCGCTGGTG
ATCCCCCCGGTGCTGGAACTGCTCTACAGCGCCTACGGCTTCACCGGGGCCCTGCCGCGCGAGGGAATGGAC
CCCGGCCAGGCCCTGGCCGCGCCGCAGGCGACCCTGATGACGGCGATCGCCAGCGGGATTTTCCACGACGCG
CTGAACTGGAACATGATTCTCATCGGCGTCGCCCTGGGCATCGCCCTGATCCTCGTCGACCTGCTCCTGCGC
CGTACCGGCAAGGCCTGCCTGCCGGTGCTGGCGGTGGGCCTGGGGATCTACCTGCCGCCGACCATCGGCATG
ACCCTGGTGGTCGGCGCGCTGATTTCCTGGCTACTGGAAAATGCCCTGAAGAAGCGCGCGGCGGCAGCCGGG
GTCGACGAAGAGACCTATGCCGAAGAGCCGAAGCGACGCGGCGTGCTGCTGGCCTCGGGGCTGATCGTCGGC
GAGAGCCTGATGGGCATCCTGCTCGCCGGGGTGATCGGCGCCACCGGCGAGGACGCGCCGCTGGCGCTGGCC
GGCGCCGGCTTCGCGGGCATCGCCCAGTGGCTGGGACTGGTGGTATTCGTCGCGATCTGCGTGCTGTTCTAC
CGGCGAGTGCTGGCGCGCTGA
Translation:
MQERIPDELTLPELTLRGLILGALITVVFTASNVYLGLKVGLTFASSIPAAVISMAVLRYFSGANILENNMV
QTQASAAGTLSSIIFILPGLLMIGYWSGFPFWQTAAICSIGGILGVLYTIPLRRVMVVQSELPYPEGVAAAE
ILRVGSDGAEDEEDARAPRAAGNAPGLYDILGGGLVAALFSLWSSGFKVLAEGFSVWLSAGQAAFRLSTGFS
LALVGAGYLMGITAGIAILIGVVISWGVAVPLLTVNSVPADGQSLSDLATQLWSSQVRFLGAGTIGVAALWT
LATLFKPMVRGVWASLGAVRGNSQASSLRTELDMPAKWILLIAGILLVSLFVVFSHFLGAAAPDMASPQFWS
LVAVCVVFAFFFGFLIAAACGYMAGLVGSSSSPISGIGIIAVILVSLLILGFGSIEGGLLDRQNGKLAIALA
LFTTSVVLAIAAISNDNLQDLKTGYLVGATPWRQQVALIVGCIVGALVIPPVLELLYSAYGFTGALPREGMD
PGQALAAPQATLMTAIASGIFHDALNWNMILIGVALGIALILVDLLLRRTGKACLPVLAVGLGIYLPPTIGM
TLVVGALISWLLENALKKRAAAAGVDEETYAEEPKRRGVLLASGLIVGESLMGILLAGVIGATGEDAPLALA
GAGFAGIAQWLGLVVFVAICVLFYRRVLAR*
AnnotationID:382GeneID:373
AnnotatorUID: urbach
Modification Date/Time: 2004-04-14 14:02:14
Gene Name:
Confidence Code:4
GeneProduct:possible membrane protein
Cell Localization:()
Synonyms:PA3934
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1297,pfam03169
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAP96616.1| AE017156) putative oligopeptide transporter [Haemophilus ducreyi 35000HP]
Identity: 54.12%
Similarity: 71.20%
Gaps: 35
Score: 1828.0






 
Structural Features:
>gnl|CDD|26035 pfam03169, OPT, OPT oligopeptide transporter protein.
 Score =  266 bits (681), Expect = 1e-71
 Identities = 171/673 (25%), Positives = 281/673 (41%), Gaps = 72/673 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:749




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17891




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:373
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
624
                           PA3934_tr
                           translation of PA3934
                           678
                           99.70
                           99.85
                           0
                           3358.0
     

     
     
29323
                           gb|AAG07321.1|AE004811_4
                           (AE004811) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           678
                           99.70
                           99.85
                           0
                           3358.0
     

     
     
29325
                           emb|CAE41421.1|
                           (BX640414) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           690
                           65.36
                           78.40
                           20
                           2206.0
     

     
     
29324
                           emb|CAE35643.1|
                           (BX640448) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           701
                           64.47
                           77.17
                           31
                           2210.0
     

     
     
29326
                           emb|CAD17085.1|
                           (AL646074) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           694
                           62.68
                           76.08
                           27
                           2123.0
     

     






      

          
GC ORFID: 43375How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3934Glimmer Score: 

          
Start: 3842701Stop: 3840665

          
Length: 2037


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3934 translation of PA3934Homolog Bit Score 1298.0

          
Other Homologs:  t_PA3934 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGAACGCATCCCGGATGAGCTGACCCTGCCAGAGCTCACCCTGCGTGGCCTGATCCTCGGTGCGCTG 
ATCACCGTGGTCTTCACCGCCTCCAACGTCTACCTCGGTCTGAAGGTCGGCCTGACCTTCGCCTCGTCGATC 
CCGGCGGCGGTGATCTCGATGGCCGTCCTGCGCTACTTCTCCGGCGCCAACATCCTCGAGAACAACATGGTG 
CAGACCCAGGCCTCGGCGGCCGGCACTCTGTCCTCGATCATCTTCATCCTTCCCGGCCTGCTGATGATCGGC 
TACTGGAGTGGCTTCCCGTTCTGGCAGACCGCGGCGATCTGCTCCATCGGCGGCATTCTCGGGGTGCTCTAT 
ACCATTCCGCTGCGCCGGGTGATGGTGGTGCAGAGCGAACTGCCGTATCCGGAAGGGGTGGCGGCGGCGGAA 
ATCCTCCGGGTCGGCAGCGACGGCGCCGAGGACGAGGAAGACGCCCGCGCGCCGCGTGCCGCCGGTAACGCG 
CCGGGGCTCTACGACATCCTCGGCGGCGGCCTGGTGGCGGCGCTGTTCAGCCTCTGGAGCAGCGGCTTCAAG 
GTTCTCGCCGAAGGCTTCAGCGTCTGGCTCAGTGCCGGGCAGGCGGCGTTCCGCCTTTCCACCGGTTTTTCC 
CTGGCTCTGGTCGGTGCCGGCTACCTGATGGGCATCACCGCCGGCATCGCGATCCTCATCGGCGTGGTGATC 
TCCTGGGGCGTCGCGGTGCCGTTGCTGACCGTCAACAGCGTGCCGGCCGACGGCCAGAGCCTGTCGGACCTG 
GCCACCCAACTGTGGAGTTCGCAGGTGCGCTTCCTCGGCGCCGGCACCATCGGCGTGGCCGCGCTGTGGACC 
CTGGCGACCCTGTTCAAGCCGATGGTGCGGGGCGTCTGGGCCTCCCTCGGGGCAGTGCGCGGCAATAGCCAG 
GCGAGCAGCCTGCGCACCGAGCTGGACATGCCGGCCAAGTGGATCCTGCTGATCGCCGGGATACTGCTGGTC 
TCGCTGTTCGTGGTCTTCAGCCACTTCCTCGGTGCCGCCGCGCCGGACATGGCCAGCCCGCAGTTCTGGAGC 
CTGGTGGCGGTATGCGTGGTGTTCGCCTTCTTCTTCGGCTTCCTGATCGCCGCCGCCTGCGGCTACATGGCC 
GGCCTGGTCGGTTCGTCGAGCAGTCCGATCTCGGGGATCGGAATCATCGCGGTCATCCTGGTGTCGTTGCTG 
ATACTCGGCTTCGGCAGCATCGAGGGCGGCCTGCTGGACCGCCAGAACGGCAAGCTGGCGATCGCCCTGGCG 
CTGTTCACCACCTCGGTGGTGCTGGCCATCGCGGCGATCTCCAACGACAACCTGCAAGACCTCAAGACCGGC 
TACCTGGTCGGCGCCACGCCCTGGCGCCAGCAGGTCGCGCTGATCGTCGGCTGCATCGTCGGCGCGCTGGTG 
ATCCCCCCGGTGCTGGAACTGCTCTACAGCGCCTACGGCTTCACCGGGGCCCTGCCGCGCGAGGGAATGGAC 
CCCGGCCAGGCCCTGGCCGCGCCGCAGGCGACCCTGATGACGGCGATCGCCAGCGGGATTTTCCACGACGCG 
CTGAACTGGAACATGATTCTCATCGGCGTCGCCCTGGGCATCGCCCTGATCCTCGTCGACCTGCTCCTGCGC 
CGTACCGGCAAGGCCTGCCTGCCGGTGCTGGCGGTGGGCCTGGGGATCTACCTGCCGCCGACCATCGGCATG 
ACCCTGGTGGTCGGCGCGCTGATTTCCTGGCTACTGGAAAATGCCCTGAAGAAGCGCGCGGCGGCAGCCGGG 
GTCGACGAAGAGACCTATGCCGAAGAGCCGAAGCGACGCGGCGTGCTGCTGGCCTCGGGGCTGATCGTCGGC 
GAGAGCCTGATGGGCATCCTGCTCGCCGGGGTGATCGGCGCCACCGGCGAGGACGCGCCGCTGGCGCTGGCC 
GGCGCCGGCTTCGCGGGCATCGCCCAGTGGCTGGGACTGGTGGTATTCGTCGCGATCTGCGTGCTGTTCTAC 
CGGCGAGTGCTGGCGCGCTGA