ViewGene
Locus Name:
GeneID:
Location:

GeneID:3729
TrivialName: PA14_11890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11890
PAO1 Ortholog Locus:PA4017
Sequence Length:642
Protein Length:213
Start: 1029337
Stop: 1028696
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07404.1|AE004818_10 (AE004818) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 211/213 (99%), Positives = 212/213 (99%)
Sequence:
ATGCACTCGACGCCCAAGCGCGTTCTGCTCGCCGGCGCGACCGGTCTTACCGGCGAGCACCTGTTGGATCGG
ATATTGAGCGAGCCGACCCTGGCCAAGGTCATCGCCCCTGCCCGCAAGGCGCTGGCCGAGCATCCGCGGCTG
GACAACCCGGTCGGCCCGCTGGCCGAGCTGCTGCCGCAACTCAACGGCAGCATCGATACCGCCTTCTGCTGC
CTCGGCACCACGATCAAGGAAGCCGGCTCGGAGGAGGCCTTCCGCGCGGTCGATTTCGACCTGCCGCTGGCG
GTGGGCAAGCGCGCGCTGGAGATGGGCGCCCGGCATTACCTGGTGGTCAGCGCCCTGGGCGCCGACGCCAAG
TCGTCGATCTTCTACAACCGGGTCAAGGGCGAACTGGAGCAGGCCCTGCAGGAACAGGGCTGGCCACAGCTG
ACCATCGCCCGGCCATCGCTGCTGTTCGGCCCGCGCGAGGAATTCCGCCTGGCCGAGATCCTCGCCGCGCCG
ATCGCCCGCATCCTTCCCGGCAAGTACCACGGCATCGAGGCCTGCGACCTGGCCCGCGCGCTCTGGCGCCTG
GCGCTGGAGGAAGGCAAGGGCGTGCGCATCGTCGAGTCCGACGAACTGCGCAAGCTGGGGAAATGA
Translation:
MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLNGSIDTAFCC
LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQL
TIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEGKGVRIVESDELRKLGK*
AnnotationID:3736GeneID:3729
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 12:12:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4017
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG4039,COG0702
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|21817 KOG4039, KOG4039, Serine/threonine kinase TIP30/CC3
[Signal transduction mechanisms]
Length = 238
Score =  105 bits (263), Expect = 8e-24
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 12/218 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7461




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24603




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3729
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5942
                           PA4017_tr
                           translation of PA4017
                           213
                           99.06
                           99.53
                           0
                           1071.0
     

     
     
166139
                           gb|AAG07404.1|AE004818_10
                           (AE004818) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           213
                           99.06
                           99.53
                           0
                           1071.0
     

     
     
166140
                           gb|AAO54274.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           213
                           72.30
                           84.03
                           0
                           802.0
     

     
     
166141
                           gb|AAN66177.1|AE016245_6
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           214
                           70.09
                           81.77
                           1
                           783.0
     

     
     
166143
                           gb|AAN82347.1|AE016767_107
                           (AE016767) Hypothetical protein yraR [Escherichia coli CFT073]
                           215
                           47.44
                           64.18
                           6
                           484.0
     

     






      

          
GC ORFID: 46731How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4017Glimmer Score: 

          
Start: 3924601Stop: 3925242

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4017 translation of PA4017Homolog Bit Score 417.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3622 (ORF: BLASTX 308.0), t_PA4017 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACTCGACGCCCAAGCGCGTTCTGCTCGCCGGCGCGACCGGTCTTACCGGCGAGCACCTGTTGGATCGG 
ATATTGAGCGAGCCGACCCTGGCCAAGGTCATCGCCCCTGCCCGCAAGGCGCTGGCCGAGCATCCGCGGCTG 
GACAACCCGGTCGGCCCGCTGGCCGAGCTGCTGCCGCAACTCAACGGCAGCATCGATACCGCCTTCTGCTGC 
CTCGGCACCACGATCAAGGAAGCCGGCTCGGAGGAGGCCTTCCGCGCGGTCGATTTCGACCTGCCGCTGGCG 
GTGGGCAAGCGCGCGCTGGAGATGGGCGCCCGGCATTACCTGGTGGTCAGCGCCCTGGGCGCCGACGCCAAG 
TCGTCGATCTTCTACAACCGGGTCAAGGGCGAACTGGAGCAGGCCCTGCAGGAACAGGGCTGGCCACAGCTG 
ACCATCGCCCGGCCATCGCTGCTGTTCGGCCCGCGCGAGGAATTCCGCCTGGCCGAGATCCTCGCCGCGCCG 
ATCGCCCGCATCCTTCCCGGCAAGTACCACGGCATCGAGGCCTGCGACCTGGCCCGCGCGCTCTGGCGCCTG 
GCGCTGGAGGAAGGCAAGGGCGTGCGCATCGTCGAGTCCGACGAACTGCGCAAGCTGGGGAAATGA