ViewGene

Locus Name:
GeneID:
Location:

GeneID:3728
TrivialName: PA14_22650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22650
PAO1 Ortholog Locus:PA3214
Sequence Length:645
Protein Length:214
Start: 1970619
Stop: 1969975
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06602.1|AE004744_17 (AE004744) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 214/214 (100%), Positives = 214/214 (100%)
Sequence:
ATGAGGCTCGCCCTTCGCCCGCTGCGTCGCCTGTCCCTGGCCGCCGGCCTGGCCGCGCTCGCCACCCTCGGC
GCCTGCTCGATCCTGCCGGAAGCGCAGGTCCTCCAGGTCTACCTGCTACCGGTGCACAACCCTCCGGCCAGC
GCCGCCGCGCGGCCGGTCGACTGGTCGCTGCGGATCGCCCGGCCGCGTACCAGCCTGGTGCTGGAGAGCCCG
CGCATCGCAGTGCGCCCGCACGGCGACGAAATCAGCGTGTACCAGGGCGCGCGCTGGAGCGATCCGGCACCG
TCGCTGCTGCGTGACCGTCTGATGCAGGCGTTCCAGGCCGACGGCCGGGTCCGCGGCCTGAGCAGCGACGAC
AGCAACCTGCAGGCCGATTTCGAACTGGGCGGCGACCTTCGCGCCTTCCAGACCGAGTACCCGAACGGCCAG
GCCAGCGCGCTGATCCGCTACGACGCGCGCCTGGTGCGTACCGACGACAAGCGCGTGGTCGCCAGCCGGCGT
TTCGAGGTCAGCCAGCCGGTGGATGGCAAGAAGGTCGCGGCGGTGGTCAGCGCCTTCGGCAAGGCCGGCGAT
ACGCTGTCGGCCCAGGTTCTCGACTGGACCCTGCGCCAGGCCTCGGCGCAACCCGCCGTGCAGCCCTGA
Translation:
MRLALRPLRRLSLAAGLAALATLGACSILPEAQVLQVYLLPVHNPPASAAARPVDWSLRIARPRTSLVLESP
RIAVRPHGDEISVYQGARWSDPAPSLLRDRLMQAFQADGRVRGLSSDDSNLQADFELGGDLRAFQTEYPNGQ
ASALIRYDARLVRTDDKRVVASRRFEVSQPVDGKKVAAVVSAFGKAGDTLSAQVLDWTLRQASAQPAVQP*
AnnotationID:3735GeneID:3728
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 09:09:08
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type uncharacterized transport system
Cell Localization:()
Synonyms:PA3214
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative lipoprotein
Functional Category Confidence Code:5
COGs:COG3218
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65773.1|AE016203_6 (AE016774) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 211

 Score =  209 bits (533), Expect = 7e-54
 Identities = 109/201 (54%), Positives = 151/201 (75%), Gaps = 6/201 (2%)

Structural Features:
COG3218, ABC-type uncharacterized transport system, auxiliary component
CD-Length = 205 residues, 100.0% aligned
Score =  232 bits (592), Expect = 3e-62
Identities = 103/207 (49%), Positives = 124/207 (59%), Gaps = 2/207 (0%)
Genomic Context:
Comment:
ReferenceID:7459
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24601
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32331
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3728_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3728

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5941 PA3214_tr translation of PA3214 214 99.99 99.99 0 1071.0
166137 gb|AAG06602.1|AE004744_17 (AE004744) hypothetical protein PA3214 [Pseudomonas aeruginosa PAO1] 214 99.99 99.99 0 1071.0
166138 gb|AAN65773.1|AE016203_6 (AE016774) lipoprotein, putative [Pseudomonas putida KT2440] 220 52.27 72.27 15 540.0
GC ORFID: 46730How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3214Glimmer Score:
Start: 2983312Stop: 2983956
Length: 645
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3214 translation of PA3214Homolog Bit Score 417.0
Other Homologs: t_PA3214 (ORF: GLIMMER)
GC ORF Sequence
ATGAGGCTCGCCCTTCGCCCGCTGCGTCGCCTGTCCCTGGCCGCCGGCCTGGCCGCGCTCGCCACCCTCGGC
GCCTGCTCGATCCTGCCGGAAGCGCAGGTCCTCCAGGTCTACCTGCTACCGGTGCACAACCCTCCGGCCAGC
GCCGCCGCGCGGCCGGTCGACTGGTCGCTGCGGATCGCCCGGCCGCGTACCAGCCTGGTGCTGGAGAGCCCG
CGCATCGCAGTGCGCCCGCACGGCGACGAAATCAGCGTGTACCAGGGCGCGCGCTGGAGCGATCCGGCACCG
TCGCTGCTGCGTGACCGTCTGATGCAGGCGTTCCAGGCCGACGGCCGGGTCCGCGGCCTGAGCAGCGACGAC
AGCAACCTGCAGGCCGATTTCGAACTGGGCGGCGACCTTCGCGCCTTCCAGACCGAGTACCCGAACGGCCAG
GCCAGCGCGCTGATCCGCTACGACGCGCGCCTGGTGCGTACCGACGACAAGCGCGTGGTCGCCAGCCGGCGT
TTCGAGGTCAGCCAGCCGGTGGATGGCAAGAAGGTCGCGGCGGTGGTCAGCGCCTTCGGCAAGGCCGGCGAT
ACGCTGTCGGCCCAGGTTCTCGACTGGACCCTGCGCCAGGCCTCGGCGCAACCCGCCGTGCAGCCCTGA