ViewGene
Locus Name:
GeneID:
Location:

GeneID:3727
TrivialName: PA14_26570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26570
PAO1 Ortholog Locus:PA2899
Sequence Length:639
Protein Length:212
Start: 2314953
Stop: 2315591
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06287.1|AE004716_5 (AE004716) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 212/212 (100%), Positives = 212/212 (100%)
Sequence:
ATGAGTTCGAACGAAACCCTGCCGGGGCTGGTGATCGCCGATTCCTTCCCGGTCATGCAGTGGGCGCTGCAG
CGCTACCTCAGCGAGGAGTGCGGACGCCAGGTGCTGGCGGTGGTCGGCGATAGCGACAGCCTGGTGGAGCGC
CTGGCCGACCTGCCGCCGGAAAGCATCCTGATCACCGAGCTGGGCTTGCCTGGCCAGCGCAGCCGCGACGGT
ATCCACCTGGTGGAATGGCTGACCCGACACTGCCCGCAAATGAAGGTGATGGTCTACTCGGTGTTCAGCGCG
CCGTTGCTGGCCAAGGCGGTCCTGCGCAGCGGCGCCTCGGCCTACATCAGCAAGCGCAGCCCGCTGGAGACG
CTGAAGGCGGCGCTGGAGTGCATGGCGCTCGGACAGACCTTCCTCGACCCCGGCCTGCACCCGCAGCGGCAT
ACCGGCAAGCCGCTGAGCCCCACCGAGGTGGACATCCTCCGGCGCCTGGCGCGTGGCGACACGGTCAGCGAG
ATCGCCCAGCGGACCATGCGCAGCGTGTCGACCATCAGCACCCACAAGAAGAACGCGATGGTCAAGATAGGC
CTCAACAGCGACGCCGAACTGATCGCCCTGGGCGTGATGAACTGGCTCCACGAACTCGCCTGA
Translation:
MSSNETLPGLVIADSFPVMQWALQRYLSEECGRQVLAVVGDSDSLVERLADLPPESILITELGLPGQRSRDG
IHLVEWLTRHCPQMKVMVYSVFSAPLLAKAVLRSGASAYISKRSPLETLKAALECMALGQTFLDPGLHPQRH
TGKPLSPTEVDILRRLARGDTVSEIAQRTMRSVSTISTHKKNAMVKIGLNSDAELIALGVMNWLHELA*
AnnotationID:3734GeneID:3727
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 12:12:36
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2899
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain 
and an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  97.6% aligned
Score =  132 bits (334), Expect = 2e-32
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 15/210 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24599




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36122




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3727_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3727
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5940
                           PA2899_tr
                           translation of PA2899
                           212
                           99.99
                           99.99
                           0
                           1073.0
     

     
     
166136
                           gb|AAG06287.1|AE004716_5
                           (AE004716) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           212
                           99.99
                           99.99
                           0
                           1073.0
     

     






      

          
GC ORFID: 46729How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2899Glimmer Score: 

          
Start: 2638973Stop: 2638335

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2899 translation of PA2899Homolog Bit Score 417.0

          
Other Homologs:  t_PA2899 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTCGAACGAAACCCTGCCGGGGCTGGTGATCGCCGATTCCTTCCCGGTCATGCAGTGGGCGCTGCAG 
CGCTACCTCAGCGAGGAGTGCGGACGCCAGGTGCTGGCGGTGGTCGGCGATAGCGACAGCCTGGTGGAGCGC 
CTGGCCGACCTGCCGCCGGAAAGCATCCTGATCACCGAGCTGGGCTTGCCTGGCCAGCGCAGCCGCGACGGT 
ATCCACCTGGTGGAATGGCTGACCCGACACTGCCCGCAAATGAAGGTGATGGTCTACTCGGTGTTCAGCGCG 
CCGTTGCTGGCCAAGGCGGTCCTGCGCAGCGGCGCCTCGGCCTACATCAGCAAGCGCAGCCCGCTGGAGACG 
CTGAAGGCGGCGCTGGAGTGCATGGCGCTCGGACAGACCTTCCTCGACCCCGGCCTGCACCCGCAGCGGCAT 
ACCGGCAAGCCGCTGAGCCCCACCGAGGTGGACATCCTCCGGCGCCTGGCGCGTGGCGACACGGTCAGCGAG 
ATCGCCCAGCGGACCATGCGCAGCGTGTCGACCATCAGCACCCACAAGAAGAACGCGATGGTCAAGATAGGC 
CTCAACAGCGACGCCGAACTGATCGCCCTGGGCGTGATGAACTGGCTCCACGAACTCGCCTGA