ViewGene
Locus Name:
GeneID:
Location:

GeneID:3726
TrivialName: PA14_32280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32280
PAO1 Ortholog Locus:PA2504
Sequence Length:618
Protein Length:205
Start: 2805025
Stop: 2805642
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05892.1|AE004677_9 (AE004677) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
ATGGCCTCGTGGACCTTGGTGGACGCCAGCGCGATCGCTGTCCGCCATCCCTACACCTTCTACAAACCGGAC
GCGGAGACCATCGACCGGGTCGCCGCCGGGGAAAGCGTCAAGCTGATCTTCGCCTTCGATACCGACAACCCC
GATGCGCCGCGCGCCGAGCGGCTCTGGGTGACGGTCGAGGGCATCGAGGCGGATGGCGCCTTCAGCGGCCGC
CTGGACAACTATCCGCAATACATCCGCGACCTGTCGCTGGGCGAGCGCATCGTCTTCGAGGCGCGGCACATC
ATCAACACCGAGCACGACCCGCGGGAAACGCCGATCTCGCGCTATGCCCGGCGCTGCTTCGTGACGCGCCGG
GTGATAGACGAGGGGAAGGCGGTCGGCTACCTCTACCGCGAGGCGCCGGAAGAGGAAAACGACAGCGGCTGG
CGGCTGATGGCCGGCGACGAGTCGGACGACTACATGAATACCGCCGGGACCACCGCCTACGTCAGCCTGGGC
TCGGTGCTGAACGCCGACGACAGCATCCTGCCGCTGCTCGACGCGCCGCCGGGACGGGCGTTCGAGCGGCTG
GCCGACGGTTCCTTCATAGAGGTGCAGGGACCGGAGGGTTGA
Translation:
MASWTLVDASAIAVRHPYTFYKPDAETIDRVAAGESVKLIFAFDTDNPDAPRAERLWVTVEGIEADGAFSGR
LDNYPQYIRDLSLGERIVFEARHIINTEHDPRETPISRYARRCFVTRRVIDEGKAVGYLYREAPEEENDSGW
RLMAGDESDDYMNTAGTTAYVSLGSVLNADDSILPLLDAPPGRAFERLADGSFIEVQGPEG*
AnnotationID:3733GeneID:3726
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2504
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7455




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24597




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3726
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5939
                           PA2504_tr
                           translation of PA2504
                           205
                           99.99
                           99.99
                           0
                           1072.0
     

     
     
166135
                           gb|AAG05892.1|AE004677_9
                           (AE004677) hypothetical protein PA2504 [Pseudomonas aeruginosa PAO1]
                           205
                           99.99
                           99.99
                           0
                           1072.0
     

     






      

          
GC ORFID: 46728How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2504Glimmer Score: 

          
Start: 2148899Stop: 2148282

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2504 translation of PA2504Homolog Bit Score 417.0

          
Other Homologs:  t_PA2504 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTCGTGGACCTTGGTGGACGCCAGCGCGATCGCTGTCCGCCATCCCTACACCTTCTACAAACCGGAC 
GCGGAGACCATCGACCGGGTCGCCGCCGGGGAAAGCGTCAAGCTGATCTTCGCCTTCGATACCGACAACCCC 
GATGCGCCGCGCGCCGAGCGGCTCTGGGTGACGGTCGAGGGCATCGAGGCGGATGGCGCCTTCAGCGGCCGC 
CTGGACAACTATCCGCAATACATCCGCGACCTGTCGCTGGGCGAGCGCATCGTCTTCGAGGCGCGGCACATC 
ATCAACACCGAGCACGACCCGCGGGAAACGCCGATCTCGCGCTATGCCCGGCGCTGCTTCGTGACGCGCCGG 
GTGATAGACGAGGGGAAGGCGGTCGGCTACCTCTACCGCGAGGCGCCGGAAGAGGAAAACGACAGCGGCTGG 
CGGCTGATGGCCGGCGACGAGTCGGACGACTACATGAATACCGCCGGGACCACCGCCTACGTCAGCCTGGGC 
TCGGTGCTGAACGCCGACGACAGCATCCTGCCGCTGCTCGACGCGCCGCCGGGACGGGCGTTCGAGCGGCTG 
GCCGACGGTTCCTTCATAGAGGTGCAGGGACCGGAGGGTTGA