ViewGene

Locus Name:
GeneID:
Location:

GeneID:3725
TrivialName: PA14_34260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34260
PAO1 Ortholog Locus:PA2351
Sequence Length:654
Protein Length:217
Start: 3046732
Stop: 3046079
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05739.1|AE004661_6 (AE004661) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 217/217 (100%), Positives = 217/217 (100%)
Sequence:
ATGTCGCCCATGCTTGAACGGCTCTGGCAAGGTTTCCTCGATACGCTGCTGATGATCGGCGCGTCCTCCGCC
ATCGTCCTGCTGGTGGGTATCCCGCTGGCCCTGGTGCTGGTCACCACCGGGCCGGGCGGGATCTTCGAGGCG
CGCCTGCTCAATCGCATCCTGGGCGGTCTGGTCAACGTGCTGCGCTCGGTACCCTTCCTGATCCTGATGGTG
GCGCTGATTCCCTTTACCCGGATGATCGTCGGCACCAGCTATGGAGTCTGGGCCGCGGTGGTGCCGCTGACC
ATCGCCGCCACGCCGTTCTTCGCGCGGATCGCCGAGGTCAGCCTGCGCGAAGTCGACCACGGCCTGGTGGAG
GCGGCCCAGGCGATGGGCTGCGAACGCCGCCACATCATCTGCAACGTACTGTTGCCGGAGGCGCGACCGGGC
ATCGTCGGCGGCTTCACCATCACCCTGGTGACCATGATCAATTCCTCGGCCATGGCCGGCGCGATCGGTGCC
GGCGGCCTCGGCGACCTGGCCTACCGCTACGGCTACCAGCGCTTCGACACCCAGGTGATGCTCACCGTGATC
ATCGTCCTTGTGCTGCTGGTCACGTTGATCCAGTTCGGCGGCGACCGCCTGGCCCGCCTGCTGAACAAACGC
CTGTAG
Translation:
MSPMLERLWQGFLDTLLMIGASSAIVLLVGIPLALVLVTTGPGGIFEARLLNRILGGLVNVLRSVPFLILMV
ALIPFTRMIVGTSYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLVEAAQAMGCERRHIICNVLLPEARPG
IVGGFTITLVTMINSSAMAGAIGAGGLGDLAYRYGYQRFDTQVMLTVIIVLVLLVTLIQFGGDRLARLLNKR
L*
AnnotationID:3732GeneID:3725
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:27
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:metI-1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative D-methionine ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:COG2011
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58615.1| (AE016874) D-methionine ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 214

 Score =  340 bits (871), Expect = 5e-93
 Identities = 170/212 (80%), Positives = 192/212 (90%)

>gb|AAN65851.1|AE016213_7 (AE016774) ABC transporter, permease protein [Pseudomonas putida
           KT2440]
          Length = 214

 Score =  340 bits (871), Expect = 5e-93

>gb|AAL53578.1| (AE009671) ABC TRANSPORTER PERMEASE PROTEIN [Brucella melitensis
           16M]
          Length = 230

 Score =  271 bits (693), Expect = 2e-72
 Identities = 132/213 (61%), Positives = 173/213 (81%)
Structural Features:
 COG2011, AbcD, ABC-type metal ion transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 222 residues,  96.8% aligned
Score =  265 bits (680), Expect = 2e-72
Identities = 126/215 (58%), Positives = 163/215 (75%)
Genomic Context:
Comment:
ReferenceID:7453
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24595
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32899
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3725_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3725

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5937 PA2351_tr translation of PA2351 217 99.99 99.99 0 1073.0
166025 gb|AAG05739.1|AE004661_6 (AE004661) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 217 99.99 99.99 0 1073.0
166026 gb|AAO58615.1| (AE016874) D-methionine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 217 78.34 88.47 3 868.0
166027 gb|AAN65851.1|AE016213_7 (AE016774) ABC transporter, permease protein [Pseudomonas putida KT2440] 217 78.34 88.94 3 868.0
166030 dbj|BAB51368.1| (AP003005) ABC transporter, permease protein [Mesorhizobium loti] 218 63.30 79.35 1 675.0
GC ORFID: 46727How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2351Glimmer Score:
Start: 1907184Stop: 1907837
Length: 654
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2351 translation of PA2351Homolog Bit Score 417.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3835 (ORF: BLASTX 337.0), t_PA5504 (ORF: BLASTX 221.0), psyr_15may02_Scaffold2_revised_gene3199 (ORF: BLASTX 210.0), t_PA2351 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGCCCATGCTTGAACGGCTCTGGCAAGGTTTCCTCGATACGCTGCTGATGATCGGCGCGTCCTCCGCC
ATCGTCCTGCTGGTGGGTATCCCGCTGGCCCTGGTGCTGGTCACCACCGGGCCGGGCGGGATCTTCGAGGCG
CGCCTGCTCAATCGCATCCTGGGCGGTCTGGTCAACGTGCTGCGCTCGGTACCCTTCCTGATCCTGATGGTG
GCGCTGATTCCCTTTACCCGGATGATCGTCGGCACCAGCTATGGAGTCTGGGCCGCGGTGGTGCCGCTGACC
ATCGCCGCCACGCCGTTCTTCGCGCGGATCGCCGAGGTCAGCCTGCGCGAAGTCGACCACGGCCTGGTGGAG
GCGGCCCAGGCGATGGGCTGCGAACGCCGCCACATCATCTGCAACGTACTGTTGCCGGAGGCGCGACCGGGC
ATCGTCGGCGGCTTCACCATCACCCTGGTGACCATGATCAATTCCTCGGCCATGGCCGGCGCGATCGGTGCC
GGCGGCCTCGGCGACCTGGCCTACCGCTACGGCTACCAGCGCTTCGACACCCAGGTGATGCTCACCGTGATC
ATCGTCCTTGTGCTGCTGGTCACGTTGATCCAGTTCGGCGGCGACCGCCTGGCCCGCCTGCTGAACAAACGC
CTGTAG