ViewGene
Locus Name:
GeneID:
Location:

GeneID:3724
TrivialName: PA14_44690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44690
PAO1 Ortholog Locus:PA1526
Sequence Length:660
Protein Length:219
Start: 3983955
Stop: 3983296
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04915.1|AE004581_2 (AE004581) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 218/219 (99%), Positives = 218/219 (99%)
Sequence:
ATGACGTTCAAGGCCCCGGACAGCCTGGCAGAGCAGATCGCCCACCACCTCGCGGAACGCATCATCCGGGGA
GAACTCAAGGAACGGGAACGTATCCAGGAGCAGAAGGTCACCCAGACCCTCAACGTCAGTCGCGGCTCGGTC
CGCGAGGCGCTGCTGATTCTCGAACGCCGCCACCTGGTGAACATCCTGCCGCGCCGCGGCGCCCAGGTGTCC
GAACTGTCCCCGCAACATGTGGAAAGCCTCTACGCGCTGATCGTGCAGCTCTACATCCTGCTGGCGGAAAGC
GTCGCCCGGCGCTGGCGCAGCGAAGCCGAGCTGGCACCGTTCCTGGCCATCCAGCAGCGCCTGCTGAACAAC
CTGGCGCAAAGCGATATCGACGGCTTCGTCGAGGCCAGTTTCGACATCATGCGCGCGGCCTTTCCTTTCGCG
AACAATCCCTACCTGCAGGAGACCGTCGAAAACCTGCTGCCGGCGGTGAGTCGCGCCTACCACCTGGCGCTG
GAGCGGCGCAAGGCGGAAATGAACCAGTTCCTCGGCAGTTTCGCCCAGCTCCTGCAAGCGGTGATCGCCCGT
GACGAGGCGAGGATCCGCGAGGTCCTGCTGGAATACGGCCGCCACAACTGCCAGCTGGTGCTGGCCGCGCTC
GCCGAACGCTGA
Translation:
MTFKAPDSLAEQIAHHLAERIIRGELKERERIQEQKVTQTLNVSRGSVREALLILERRHLVNILPRRGAQVS
ELSPQHVESLYALIVQLYILLAESVARRWRSEAELAPFLAIQQRLLNNLAQSDIDGFVEASFDIMRAAFPFA
NNPYLQETVENLLPAVSRAYHLALERRKAEMNQFLGSFAQLLQAVIARDEARIREVLLEYGRHNCQLVLAAL
AER*
AnnotationID:3731GeneID:3724
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:53
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA1526
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57128.1| (AE016869) transcriptional regulator, GntR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 219

 Score =  285 bits (730), Expect = 1e-76
 Identities = 152/216 (70%), Positives = 179/216 (82%)

>gb|AAN69857.1|AE016624_8 (AE016790) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 219

 Score =  275 bits (704), Expect = 1e-73
 Identities = 146/217 (67%), Positives = 177/217 (81%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7451




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24593




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37286




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3724_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3724
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5936
                           PA1526_tr
                           translation of PA1526
                           219
                           99.54
                           99.54
                           0
                           1071.0
     

     
     
166022
                           gb|AAG04915.1|AE004581_2
                           (AE004581) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           219
                           99.54
                           99.54
                           0
                           1071.0
     

     
     
166023
                           gb|AAO57128.1|
                           (AE016869) transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000]
                           219
                           69.40
                           81.73
                           0
                           727.0
     

     
     
166024
                           gb|AAN69857.1|AE016624_8
                           (AE016790) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           219
                           66.66
                           80.82
                           0
                           702.0
     

     






      

          
GC ORFID: 46726How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1526Glimmer Score: 

          
Start: 969954Stop: 970613

          
Length: 660


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1526 translation of PA1526Homolog Bit Score 417.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene827 (ORF: BLASTX 289.0), t_PA1526 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGTTCAAGGCCCCGGACAGCCTGGCAGAGCAGATCGCCCACCACCTCGCGGAACGCATCATCCGGGGA 
GAACTCAAGGAACGGGAACGTATCCAGGAGCAGAAGGTCACCCAGACCCTCAACGTCAGTCGCGGCTCGGTC 
CGCGAGGCGCTGCTGATTCTCGAACGCCGCCACCTGGTGAACATCCTGCCGCGCCGCGGCGCCCAGGTGTCC 
GAACTGTCCCCGCAACATGTGGAAAGCCTCTACGCGCTGATCGTGCAGCTCTACATCCTGCTGGCGGAAAGC 
GTCGCCCGGCGCTGGCGCAGCGAAGCCGAGCTGGCACCGTTCCTGGCCATCCAGCAGCGCCTGCTGAACAAC 
CTGGCGCAAAGCGATATCGACGGCTTCGTCGAGGCCAGTTTCGACATCATGCGCGCGGCCTTTCCTTTCGCG 
AACAATCCCTACCTGCAGGAGACCGTCGAAAACCTGCTGCCGGCGGTGAGTCGCGCCTACCACCTGGCGCTG 
GAGCGGCGCAAGGCGGAAATGAACCAGTTCCTCGGCAGTTTCGCCCAGCTCCTGCAAGCGGTGATCGCCCGT 
GACGAGGCGAGGATCCGCGAGGTCCTGCTGGAATACGGCCGCCACAACTGCCAGCTGGTGCTGGCCGCGCTC 
GCCGAACGCTGA