ViewGene
Locus Name:
GeneID:
Location:

GeneID:3723
TrivialName: PA14_54690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54690
PAO1 Ortholog Locus:PA0741
Sequence Length:642
Protein Length:213
Start: 4848496
Stop: 4849137
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04130.1|AE004509_5 (AE004509) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 212/213 (99%), Positives = 212/213 (99%)
Sequence:
ATGAAAATCGCCCTGATCGGCGCCACCGGCCACGTCGGCCACTATTTCCTCAACGAAGCCCTGCAACGCGGC
CACGCGGTAACCGCCCTGGTCCGCGACCCGAGCAAGCTGGCGGCGCGCGACGGCCTCGGCGTAGTGCAGGCG
GACGTCAGCGACCCGGCCCAGGTGGCCAGCGCCGTGGCAGGCCACGAGGTGGTCATCAGCGCTTTCAACGGC
GGCTGGGGCAGCGCCGACCTCCGCGCCCGCCACGCCGCCGGCAGCCAGGCCATTCTCGACGGCGTGAAACGC
TCCGGCGTGCCGCGCCTGCTGGTTCTCGGCGGCGCCGGGAGCCTGGAGATCGCCCCCGGCCAGCGCCTGGTG
GACAGCCCGGAATTCCCCGAGCAGTGGAAACAGGGCGCCCTCGGCGCCGCCGACGCCCTCGACCAACTGCGC
GGCGAGCAACGACTGGACTGGGTGTTCCTCAGCCCGGCGATGCTCCTCGAACCCGGCCAGCGCAGCGGCAAG
TTCCGCCTCGGCGGCGACCAGGTCCTGTTCGACGCCAAGGGCGAGAGCCGGATTTCCCTGGAAGACCTGGCG
GTAGCCATGCTCGACGAGGCCGAGCAGCCCCGTCATCATCGCCAGCGCTTCACCGTGGCCTACTGA
Translation:
MKIALIGATGHVGHYFLNEALQRGHAVTALVRDPSKLAARDGLGVVQADVSDPAQVASAVAGHEVVISAFNG
GWGSADLRARHAAGSQAILDGVKRSGVPRLLVLGGAGSLEIAPGQRLVDSPEFPEQWKQGALGAADALDQLR
GEQRLDWVFLSPAMLLEPGQRSGKFRLGGDQVLFDAKGESRISLEDLAVAMLDEAEQPRHHRQRFTVAY*
AnnotationID:3730GeneID:3723
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0741, ywnB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2910
Secondary Functional Category(ies):Putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2910, Putative NADH-flavin reductase [General function prediction only]
      CD-Length = 211 residues, 100.0% aligned
      Score =  274 bits (701), Expect = 2e-74







   
Genomic Context:






   
Comment:


















    ReferenceID:7449




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24591




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3723
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5935
                           PA0741_tr
                           translation of PA0741
                           213
                           99.53
                           99.53
                           0
                           1073.0
     

     
     
166003
                           gb|AAG04130.1|AE004509_5
                           (AE004509) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           213
                           99.53
                           99.53
                           0
                           1073.0
     

     
     
166004
                           gb|AAQ58390.1|
                           (AE016912) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           213
                           55.39
                           70.89
                           1
                           585.0
     

     
     
166005
                           emb|CAD17676.1|
                           (AL646079) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           213
                           54.92
                           69.01
                           10
                           561.0
     

     
     
166008
                           gb|AAO79658.1|
                           (AE016945) conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482]
                           220
                           49.09
                           62.72
                           8
                           491.0
     

     






      

          
GC ORFID: 46725How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0741Glimmer Score: 

          
Start: 105411Stop: 104770

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0741 translation of PA0741Homolog Bit Score 417.0

          
Other Homologs:  t_PA0741 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATCGCCCTGATCGGCGCCACCGGCCACGTCGGCCACTATTTCCTCAACGAAGCCCTGCAACGCGGC 
CACGCGGTAACCGCCCTGGTCCGCGACCCGAGCAAGCTGGCGGCGCGCGACGGCCTCGGCGTAGTGCAGGCG 
GACGTCAGCGACCCGGCCCAGGTGGCCAGCGCCGTGGCAGGCCACGAGGTGGTCATCAGCGCTTTCAACGGC 
GGCTGGGGCAGCGCCGACCTCCGCGCCCGCCACGCCGCCGGCAGCCAGGCCATTCTCGACGGCGTGAAACGC 
TCCGGCGTGCCGCGCCTGCTGGTTCTCGGCGGCGCCGGGAGCCTGGAGATCGCCCCCGGCCAGCGCCTGGTG 
GACAGCCCGGAATTCCCCGAGCAGTGGAAACAGGGCGCCCTCGGCGCCGCCGACGCCCTCGACCAACTGCGC 
GGCGAGCAACGACTGGACTGGGTGTTCCTCAGCCCGGCGATGCTCCTCGAACCCGGCCAGCGCAGCGGCAAG 
TTCCGCCTCGGCGGCGACCAGGTCCTGTTCGACGCCAAGGGCGAGAGCCGGATTTCCCTGGAAGACCTGGCG 
GTAGCCATGCTCGACGAGGCCGAGCAGCCCCGTCATCATCGCCAGCGCTTCACCGTGGCCTACTGA