ViewGene

Locus Name:
GeneID:
Location:

GeneID:3722
TrivialName: PA14_59520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59520
PAO1 Ortholog Locus:
Sequence Length:606
Protein Length:201
Start: 5294926
Stop: 5295531
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84190.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 200/201 (99%), Positives = 201/201 (100%)
Sequence:
ATGCCCAGTCCCACCCCGCTCTACCAGATCGAAGAGTGTCCAGACCTGTACGTCGACGCCTGCGTGTGCGAC
GAGCAGTGCAACCTGGTCTTTCTTTCGGCCTGGGGCCGCGACACCGTGACACAAGAGTTCCTGGCCAGGCTG
ACGCTGGGCCGGGAAGAAAATGGCATCGACCATTTCCACATCATCGTGGACGGCCGCCGCTTACCTGTCTTC
CCAAACCAGGATCTCCTGGAGAAACGCACCACCCGTCAGTTCCGCGGCACGTTGTTCGGCAGCCTGCTCAAT
CTTTGGCTGTTCGATCGGCGCGCCTCGGCGCCCGACCGAGGCAATCACCTCGCCTTCGCACTCCTGCAGCGC
GATGAGGATCCACACCAGAGGCTCTGGCCGCTGGTGATGGAAACCTGTCCGCTCCCCCTCCTGCAGCACTGG
CGCGAGCCGGTGATGGAGGTTCTCACCCAGCACCAGATGTTGACGGCCCTACCCGGGACGATCGGCAACGTC
TGCGCCTGGCGACTCGCCCTGCGGGTCGACGTGCTTGAGCCCACCCTCGGTGAGCTAATCCGCGAAAGCATT
CTTACCACCGATGCTCAGGCGCAAGCCTGA
Translation:
MPSPTPLYQIEECPDLYVDACVCDEQCNLVFLSAWGRDTVTQEFLARLTLGREENGIDHFHIIVDGRRLPVF
PNQDLLEKRTTRQFRGTLFGSLLNLWLFDRRASAPDRGNHLAFALLQRDEDPHQRLWPLVMETCPLPLLQHW
REPVMEVLTQHQMLTALPGTIGNVCAWRLALRVDVLEPTLGELIRESILTTDAQAQA*
AnnotationID:3729GeneID:3722
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 10:10:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7447
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24589
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3722

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
165998 gb|AAP84190.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 201 99.50 99.99 0 1074.0
166001 gb|AAN62169.1|AF440523_76 (AF440523) hypothetical protein [Pseudomonas aeruginosa] 216 53.70 64.35 16 536.0
166000 emb|CAE92931.1| (AJ617740) hypothetical protein [Pseudomonas putida] 217 53.45 64.51 17 537.0
165999 gb|AAM37094.1| (AE011861) hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 217 52.53 63.59 16 546.0
166002 gb|AAN62305.1|AF440524_92 (AF440524) hypothetical protein [Pseudomonas aeruginosa] 218 50.00 61.00 17 513.0
GC ORFID: 46724How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL065Glimmer Score:
Start: 4558605Stop: 4559210
Length: 606
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL065 201 Homolog: XAC2241 / Hypothetical protein / X. axonopodis pv. citri / 306 (AAM37094) translation of RL065Homolog Bit Score 418.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene162 (ORF: BLASTX 301.0), t_RL065 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAGTCCCACCCCGCTCTACCAGATCGAAGAGTGTCCAGACCTGTACGTCGACGCCTGCGTGTGCGAC
GAGCAGTGCAACCTGGTCTTTCTTTCGGCCTGGGGCCGCGACACCGTGACACAAGAGTTCCTGGCCAGGCTG
ACGCTGGGCCGGGAAGAAAATGGCATCGACCATTTCCACATCATCGTGGACGGCCGCCGCTTACCTGTCTTC
CCAAACCAGGATCTCCTGGAGAAACGCACCACCCGTCAGTTCCGCGGCACGTTGTTCGGCAGCCTGCTCAAT
CTTTGGCTGTTCGATCGGCGCGCCTCGGCGCCCGACCGAGGCAATCACCTCGCCTTCGCACTCCTGCAGCGC
GATGAGGATCCACACCAGAGGCTCTGGCCGCTGGTGATGGAAACCTGTCCGCTCCCCCTCCTGCAGCACTGG
CGCGAGCCGGTGATGGAGGTTCTCACCCAGCACCAGATGTTGACGGCCCTACCCGGGACGATCGGCAACGTC
TGCGCCTGGCGACTCGCCCTGCGGGTCGACGTGCTTGAGCCCACCCTCGGTGAGCTAATCCGCGAAAGCATT
CTTACCACCGATGCTCAGGCGCAAGCCTGA