ViewGene
Locus Name:
GeneID:
Location:

GeneID:3721
TrivialName: PA14_05660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05660
PAO1 Ortholog Locus:PA0436
Sequence Length:621
Protein Length:206
Start: 503481
Stop: 504101
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03825.1|AE004481_1 (AE004481) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 206/206 (100%), Positives = 206/206 (100%)
Sequence:
ATGGGCACACACAAGATCGAGATCCGCCGCCGCAACGTCGAGAAGATTCTCCTGGCCGCCGAAAAAGTCTTC
GCCGAAAAAGGCTACGCCGGCACCTCCATGGGCAACATCGCCGAAGAAGCCGAACTGCCGCGCTCCAACCTG
CACTACTACTTCAGCACCAAGGACGAGCTGTACCGCGACGTCCTCCTCGGCCTGCTCGAGGTCTGGAAGCAG
GACGCCCTCTGCTTCGAGATGTTCGATGACCCAAGGGTGGTATTGACCAGCTATATCCGCGCGAAGATGAAC
CATTCGCGCACCCGCCCGCATGGCTCCAAGGTCTGGGCCAACGAAATCATGCATGGCGCGCCGCTGCTCGGC
GCCACCCTCGACGACAGCCTCTACGAATGGGCCAAGATGAAGGAGGCGAAGATCCGCCAGTGGGTCGAGGAA
AAGCGCATCCTGTCGATCGAGCCGAGCAGCCTGCTCTACATGATCTGGGCCTCCACCCAGCACTACGCCGAC
TTCGGCTACCAGGTCGAGGTGCTCAACGGCCACCAGCCGCTCAGCGACATGCAGTTCGAAAGGGCGGTACAG
ACGGTGACCAGCGTGGTCCTGCGCGGAATCGGATTGGAGCCCTGA
Translation:
MGTHKIEIRRRNVEKILLAAEKVFAEKGYAGTSMGNIAEEAELPRSNLHYYFSTKDELYRDVLLGLLEVWKQ
DALCFEMFDDPRVVLTSYIRAKMNHSRTRPHGSKVWANEIMHGAPLLGATLDDSLYEWAKMKEAKIRQWVEE
KRILSIEPSSLLYMIWASTQHYADFGYQVEVLNGHQPLSDMQFERAVQTVTSVVLRGIGLEP*
AnnotationID:3728GeneID:3721
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 12:12:55
Gene Name:
Confidence Code:3
GeneProduct:putative transciptional regulator
Cell Localization:()
Synonyms:PA0436
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309,pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69875.1|AE016626_10 (AE016790) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 203

 Score =  164 bits (414), Expect = 4e-40
 Identities = 82/194 (42%), Positives = 124/194 (63%)






 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  96.5% aligned
Score = 65.1 bits (156), Expect = 5e-12
Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 10/202 (4%)

pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 60.4 bits (147), Expect = 2e-10
Identities = 19/47 (40%), Positives = 32/47 (68%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7445




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24587




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33742




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3721_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3721
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5933
                           PA0436_tr
                           translation of PA0436
                           206
                           99.99
                           99.99
                           0
                           1074.0
     

     
     
165993
                           gb|AAG03825.1|AE004481_1
                           (AE004481) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           206
                           99.99
                           99.99
                           0
                           1074.0
     

     
     
165995
                           gb|AAN69875.1|AE016626_10
                           (AE016790) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           209
                           41.14
                           61.24
                           9
                           413.0
     

     
     
165996
                           gb|AAO57167.1|
                           (AE016869) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           208
                           38.94
                           58.65
                           8
                           376.0
     

     
     
5934
                           PA1504_tr
                           translation of PA1504
                           222
                           38.28
                           56.75
                           22
                           418.0
     

     






      

          
GC ORFID: 46723How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0436Glimmer Score: 

          
Start: 6304823Stop: 6305443

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0436 translation of PA0436Homolog Bit Score 418.0

          
Other Homologs:  t_PA1504 (ORF: BLASTX 168.0), psyr_15may02_Scaffold1_revised_gene617 (ORF: BLASTX 150.0), t_PA0436 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCACACACAAGATCGAGATCCGCCGCCGCAACGTCGAGAAGATTCTCCTGGCCGCCGAAAAAGTCTTC 
GCCGAAAAAGGCTACGCCGGCACCTCCATGGGCAACATCGCCGAAGAAGCCGAACTGCCGCGCTCCAACCTG 
CACTACTACTTCAGCACCAAGGACGAGCTGTACCGCGACGTCCTCCTCGGCCTGCTCGAGGTCTGGAAGCAG 
GACGCCCTCTGCTTCGAGATGTTCGATGACCCAAGGGTGGTATTGACCAGCTATATCCGCGCGAAGATGAAC 
CATTCGCGCACCCGCCCGCATGGCTCCAAGGTCTGGGCCAACGAAATCATGCATGGCGCGCCGCTGCTCGGC 
GCCACCCTCGACGACAGCCTCTACGAATGGGCCAAGATGAAGGAGGCGAAGATCCGCCAGTGGGTCGAGGAA 
AAGCGCATCCTGTCGATCGAGCCGAGCAGCCTGCTCTACATGATCTGGGCCTCCACCCAGCACTACGCCGAC 
TTCGGCTACCAGGTCGAGGTGCTCAACGGCCACCAGCCGCTCAGCGACATGCAGTTCGAAAGGGCGGTACAG 
ACGGTGACCAGCGTGGTCCTGCGCGGAATCGGATTGGAGCCCTGA