ViewGene
Locus Name:
GeneID:
Location:

GeneID:3720
TrivialName: PA14_14900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14900
PAO1 Ortholog Locus:PA3801
Sequence Length:645
Protein Length:214
Start: 1265448
Stop: 1266092
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07188.1|AE004798_11 (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 213/214 (99%), Positives = 214/214 (100%)
Sequence:
GTGACATCGCGTACCGAAGACGAAGACCTGGCGCAGATCAAGGACTGGTGGCAGCGCAACGGCAAGCCCCTG
GTCACCGGCGGCATCCTCGCGCTGGCAGTGGTATTCGGCTGGCAGGCCTGGCAGAAGTACCAGACCAACCAG
GCGCAGGGCGCCTCGATCGTCTACCAGCAACTGATCGAAACCGCGCTGAATCCGGCCGGCCAGCCGGATCCG
GCGAAGGTGGCGGAGCTGGCCGGCAAGCTGAAGAGCGAGTTCGGCGGCACCCATTATGCCCAGTACGGCAGC
CTGTTCGTGGCCAAGGTCGCGGTCGACAGCGGCAAGCTGGATGACGCCGTTGCCGAGCTGAAGGCGGTCATG
GACAAGCCGGCCGACGCCACCCTCGGCGAACTGGCGCGGCAGCGCCTGGCCCGGGTCCTGGCGGCCCAGGGC
AAGGTCGAGGAAGGCCTGAAGCTGCTCGATGGCGACGCCGACAAGGCCTACGTCTCTACCCGCGAGGAGCTC
AAGGGCGACCTGCTGGTGCAGCTCAAGCGCACCGACGAGGCCCGCGCGGCCTACGAGAAAGCCAAGCAGTCG
CTGCCCGAAGACGGTGCCGGCGATGCCCTGCAGATCAAGCTCGACGACCTGTCCAAGGGAGAGGCCTGA
Translation:
MTSRTEDEDLAQIKDWWQRNGKPLVTGGILALAVVFGWQAWQKYQTNQAQGASIVYQQLIETALNPAGQPDP
AKVAELAGKLKSEFGGTHYAQYGSLFVAKVAVDSGKLDDAVAELKAVMDKPADATLGELARQRLARVLAAQG
KVEEGLKLLDGDADKAYVSTREELKGDLLVQLKRTDEARAAYEKAKQSLPEDGAGDALQIKLDDLSKGEA*
AnnotationID:3727GeneID:3720
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3801
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24585




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31756




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3720_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3720
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5932
                           PA3801_tr
                           translation of PA3801
                           214
                           99.53
                           99.99
                           0
                           1075.0
     

     
     
165990
                           gb|AAG07188.1|AE004798_11
                           (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           214
                           99.06
                           99.99
                           0
                           1072.0
     

     
     
165991
                           gb|AAN66480.1|AE016276_15
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           214
                           73.36
                           84.57
                           1
                           817.0
     

     
     
165992
                           gb|AAO54957.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           214
                           72.89
                           86.44
                           1
                           806.0
     

     






      

          
GC ORFID: 46722How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3801Glimmer Score: 

          
Start: 3688490Stop: 3687846

          
Length: 645


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3801 translation of PA3801Homolog Bit Score 418.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4530 (ORF: BLASTX 319.0), t_PA3801 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACATCGCGTACCGAAGACGAAGACCTGGCGCAGATCAAGGACTGGTGGCAGCGCAACGGCAAGCCCCTG 
GTCACCGGCGGCATCCTCGCGCTGGCAGTGGTATTCGGCTGGCAGGCCTGGCAGAAGTACCAGACCAACCAG 
GCGCAGGGCGCCTCGATCGTCTACCAGCAACTGATCGAAACCGCGCTGAATCCGGCCGGCCAGCCGGATCCG 
GCGAAGGTGGCGGAGCTGGCCGGCAAGCTGAAGAGCGAGTTCGGCGGCACCCATTATGCCCAGTACGGCAGC 
CTGTTCGTGGCCAAGGTCGCGGTCGACAGCGGCAAGCTGGATGACGCCGTTGCCGAGCTGAAGGCGGTCATG 
GACAAGCCGGCCGACGCCACCCTCGGCGAACTGGCGCGGCAGCGCCTGGCCCGGGTCCTGGCGGCCCAGGGC 
AAGGTCGAGGAAGGCCTGAAGCTGCTCGATGGCGACGCCGACAAGGCCTACGTCTCTACCCGCGAGGAGCTC 
AAGGGCGACCTGCTGGTGCAGCTCAAGCGCACCGACGAGGCCCGCGCGGCCTACGAGAAAGCCAAGCAGTCG 
CTGCCCGAAGACGGTGCCGGCGATGCCCTGCAGATCAAGCTCGACGACCTGTCCAAGGGAGAGGCCTGA