ViewGene
Locus Name:
GeneID:
Location:

GeneID:372
TrivialName: PA14_26670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26670
PAO1 Ortholog Locus:PA2891
Sequence Length:1986
Protein Length:661
Start: 2325014
Stop: 2323029
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06279.1|AE004715_5 (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa PAO1]
Identities = 659/661 (99%), Positives = 659/661 (99%)
Sequence:
ATGCCCAGCTTCAACAAGATCCTCGTCGCCAACCGCGGTGAAATCGCCTGCCGGGTGCTGCGCACCGCCCAT
GAACTGGGCTACCGCAGCGTCGCCGTGTACAGCGAGGCGGACGCCGACGCCCGCCATGTGCAACTGGCCGAC
GAGGCCGTGTGCATCGGCCCGGCAGCGGTGGCGCAGTCCTACCTGAACCTCGAGGCGATCCTCGACGCCGCC
CGTCGCAGCGGCGCCGAGGCGATCCACCCCGGCTACGGCTTCCTCTCCGAGAACGCCGAGTTCGCCCGTGCC
TGCGAAGCCGCCGGGATCGTCTTCATCGGCCCGGATGCGGAAGCCATCCACCTGATGGGCAGCAAGCGCCTG
TCGAAGATCGCCATGCTCGCCGCCGGGGTGCCGTGCATCCCCGGCTACGAAGGCGCCGAACAGGACGACGCG
ACCCTGCGGCGCGAGGCCGAACGCATCGGCTACCCGCTGATGATCAAGGCCAGCGCCGGCGGCGGCGGCCGC
GGCATGCGCCTGGTGGAGGAACCCGGCCAACTGCTGGAACAGTTGCGCACTGCGCGCTCGGAAGCGCTGGGC
GCCTTCGGCAGCGCCGAGCTGATCCTGGAGAGGGCCGTGCTGCGCCCGCGCCATGTGGAGATCCAGGTGTTC
GGCGACCGCCACGGCAACCTGCTCTACCTCGGCGAACGCGACTGCTCGGTGCAGCGCCGCCACCAGAAGGTC
ATCGAGGAAGCCCCCTGCCCGGTGCTCGATGCCGACCTGCGTCGCGCCATGGGCGAGGCGGCGGTGAAGGCC
GCGGCCTCGGTCAACTACGTGGGCGCCGGCACCGTCGAGTTTCTTCTCGGCGAGGATGGTCGCTTCTACTTC
CTGGAGATGAATACCCGCCTGCAGGTCGAACACCCGGTCACCGAACTGGTCACCGGCCAGGACCTGGTGGCC
TGGCAGATCCGCATCGCCGAGGGCCATCCGCTGCCGCTGCGGCAGGAGCAGGTGGAACTGCGCGGGCATGCC
ATCGAGGTCCGCCTCTACGCCGAGGACGCCGGTCGCGGCTTCCTGCCGCAGACCGGCACGGTGCTGCGCTGG
GACCCGGAACTGCTGCCCGGCGTACGCATCGACCATGGCCTGGTCGAGGGGCAGGCGGTGACGCCCTTCTAC
GACCCGATGCTGGCCAAGCTGATCGCCTACGGGGCGACCCGCGACGAAGCCCGGCGCAAGCTGATCCGCGCG
CTGGAGCGCTGCGTGCTGCTGGGGGTCGACGGCAACCAGCGGTTCCTCGCCAACCTCCTGGCGCATCCGGAC
TTCGCCGCCGGCGAGGCGACCACCGCCTTCATCGGCGAACGCTTCGCCGAAGACCCCAGCCTGCAACCGCGC
CAGCCGGGCGCCGAGGAACTGGCCCTGGCCGCCGCCCTGCTCTACCAGGCCGGCGCCGAGGCCAGTGCGCAC
CAGCCCGGCCTGGCCGGCTGGCGCAGCGCCGCCGGGGCGCCGTGGAAGATCGTCCTGAAGCACGCCGAACAG
CGCCTGGAGATCGGCCTGGAGGTCCTCGAAAGCGGCCGTCGGCCGCGACTGCTGGCGCGCCTGGAGCGACGC
GAGATCGCCGTGCGCCTGCTCGACTGCGACGGACGCTGGGCCAGCGTCGAACTCGACGGCATTCGCCGCCGC
CACGCCTACCACCTGGACGGCGGGCGCCTCTGGCTGTACGGCCACGGCGGCAACCTCGAACTGCTCGACGTC
ACCCACGCCGGCGCCAGCGCCCAGGTCGGCGCCAGCTCCGGCACGCTCAAGGCGCCGATGGACGGCGCCATC
GTCGAGGTGCTGGTCGGCGAGGGCGAACGGGTCGGCAAGGGCCAACTGCTGCTGGTGCTGGAGGCAATGAAG
ATGGAACACCCGCTGAAGGCCGGAGTCGACGGCGTGGTCCGCCGCGTCCAGGTCGGCCGTGGCGAGCAGGTA
CGCAACCGGCAGGTGCTGGTCGAGGTGGAAGCCGACGCCTGA
Translation:
MPSFNKILVANRGEIACRVLRTAHELGYRSVAVYSEADADARHVQLADEAVCIGPAAVAQSYLNLEAILDAA
RRSGAEAIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEGAEQDDA
TLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAELILERAVLRPRHVEIQVF
GDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYF
LEMNTRLQVEHPVTELVTGQDLVAWQIRIAEGHPLPLRQEQVELRGHAIEVRLYAEDAGRGFLPQTGTVLRW
DPELLPGVRIDHGLVEGQAVTPFYDPMLAKLIAYGATRDEARRKLIRALERCVLLGVDGNQRFLANLLAHPD
FAAGEATTAFIGERFAEDPSLQPRQPGAEELALAAALLYQAGAEASAHQPGLAGWRSAAGAPWKIVLKHAEQ
RLEIGLEVLESGRRPRLLARLERREIAVRLLDCDGRWASVELDGIRRRHAYHLDGGRLWLYGHGGNLELLDV
THAGASAQVGASSGTLKAPMDGAIVEVLVGEGERVGKGQLLLVLEAMKMEHPLKAGVDGVVRRVQVGRGEQV
RNRQVLVEVEADA*
AnnotationID:381GeneID:372
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:26
Gene Name:
Confidence Code:3
GeneProduct:putative biotin carboxylase/biotin carboxyl carrier protein
Cell Localization:()
Synonyms:PA2891
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4770,COG0439
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC46252.1| (AP005938) 3-methylcrotonyl-CoA carboxylase alpha subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 658

 Score =  616 bits (1589), Expect = e-175
 Identities = 341/666 (51%), Positives = 433/666 (65%), Gaps = 29/666 (4%)

>gb|AAO56237.1| (AE016865) biotin carboxylase/biotin-containing subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 649

 Score =  582 bits (1500), Expect = e-165
 Identities = 327/660 (49%), Positives = 423/660 (64%), Gaps = 19/660 (2%)






 
Structural Features:
COG4770, Acetyl/propionyl-CoA_carboxylase, 
Acetyl/propionyl-CoA carboxylase, alpha subunit 
[Lipid metabolism]
CD-Length = 645 residues,  99.8% aligned
Score =  840 bits (2171), Expect = 0.0
Identities = 353/657 (53%), Positives = 435/657 (66%), Gaps = 12/657 (1%)

COG0439, AccC, Biotin carboxylase [Lipid metabolism]
CD-Length = 449 residues,  99.3% aligned
Score =  531 bits (1370), Expect = 8e-152
Identities = 255/446 (57%), Positives = 315/446 (70%)







   
Genomic Context:






   
Comment:


















    ReferenceID:747




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17889




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36158




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:372_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:372
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
618
                           PA2891_tr
                           translation of PA2891
                           661
                           99.69
                           99.69
                           0
                           3360.0
     

     
     
29029
                           gb|AAG06279.1|AE004715_5
                           (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa PAO1]
                           661
                           99.69
                           99.69
                           0
                           3360.0
     

     
     
29030
                           emb|CAE27585.1|
                           (BX572599) possible biotin carboxylase [Rhodopseudomonas palustris CGA009]
                           673
                           50.96
                           65.23
                           25
                           1612.0
     

     
     
29031
                           dbj|BAC46252.1|
                           (AP005938) 3-methylcrotonyl-CoA carboxylase alpha subunit [Bradyrhizobium japonicum USDA 110]
                           680
                           50.44
                           64.26
                           41
                           1613.0
     

     
     
29032
                           gb|AAG05400.1|AE004627_8
                           (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa PAO1]
                           681
                           50.07
                           63.14
                           46
                           1558.0
     

     






      

          
GC ORFID: 43374How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2891Glimmer Score: 

          
Start: 2628912Stop: 2630897

          
Length: 1986


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2891 translation of PA2891Homolog Bit Score 1298.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8073 (ORF: BLASTX 597.0), t_PA2012 (ORF: BLASTX 596.0), t_PA2891 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAGCTTCAACAAGATCCTCGTCGCCAACCGCGGTGAAATCGCCTGCCGGGTGCTGCGCACCGCCCAT 
GAACTGGGCTACCGCAGCGTCGCCGTGTACAGCGAGGCGGACGCCGACGCCCGCCATGTGCAACTGGCCGAC 
GAGGCCGTGTGCATCGGCCCGGCAGCGGTGGCGCAGTCCTACCTGAACCTCGAGGCGATCCTCGACGCCGCC 
CGTCGCAGCGGCGCCGAGGCGATCCACCCCGGCTACGGCTTCCTCTCCGAGAACGCCGAGTTCGCCCGTGCC 
TGCGAAGCCGCCGGGATCGTCTTCATCGGCCCGGATGCGGAAGCCATCCACCTGATGGGCAGCAAGCGCCTG 
TCGAAGATCGCCATGCTCGCCGCCGGGGTGCCGTGCATCCCCGGCTACGAAGGCGCCGAACAGGACGACGCG 
ACCCTGCGGCGCGAGGCCGAACGCATCGGCTACCCGCTGATGATCAAGGCCAGCGCCGGCGGCGGCGGCCGC 
GGCATGCGCCTGGTGGAGGAACCCGGCCAACTGCTGGAACAGTTGCGCACTGCGCGCTCGGAAGCGCTGGGC 
GCCTTCGGCAGCGCCGAGCTGATCCTGGAGAGGGCCGTGCTGCGCCCGCGCCATGTGGAGATCCAGGTGTTC 
GGCGACCGCCACGGCAACCTGCTCTACCTCGGCGAACGCGACTGCTCGGTGCAGCGCCGCCACCAGAAGGTC 
ATCGAGGAAGCCCCCTGCCCGGTGCTCGATGCCGACCTGCGTCGCGCCATGGGCGAGGCGGCGGTGAAGGCC 
GCGGCCTCGGTCAACTACGTGGGCGCCGGCACCGTCGAGTTTCTTCTCGGCGAGGATGGTCGCTTCTACTTC 
CTGGAGATGAATACCCGCCTGCAGGTCGAACACCCGGTCACCGAACTGGTCACCGGCCAGGACCTGGTGGCC 
TGGCAGATCCGCATCGCCGAGGGCCATCCGCTGCCGCTGCGGCAGGAGCAGGTGGAACTGCGCGGGCATGCC 
ATCGAGGTCCGCCTCTACGCCGAGGACGCCGGTCGCGGCTTCCTGCCGCAGACCGGCACGGTGCTGCGCTGG 
GACCCGGAACTGCTGCCCGGCGTACGCATCGACCATGGCCTGGTCGAGGGGCAGGCGGTGACGCCCTTCTAC 
GACCCGATGCTGGCCAAGCTGATCGCCTACGGGGCGACCCGCGACGAAGCCCGGCGCAAGCTGATCCGCGCG 
CTGGAGCGCTGCGTGCTGCTGGGGGTCGACGGCAACCAGCGGTTCCTCGCCAACCTCCTGGCGCATCCGGAC 
TTCGCCGCCGGCGAGGCGACCACCGCCTTCATCGGCGAACGCTTCGCCGAAGACCCCAGCCTGCAACCGCGC 
CAGCCGGGCGCCGAGGAACTGGCCCTGGCCGCCGCCCTGCTCTACCAGGCCGGCGCCGAGGCCAGTGCGCAC 
CAGCCCGGCCTGGCCGGCTGGCGCAGCGCCGCCGGGGCGCCGTGGAAGATCGTCCTGAAGCACGCCGAACAG 
CGCCTGGAGATCGGCCTGGAGGTCCTCGAAAGCGGCCGTCGGCCGCGACTGCTGGCGCGCCTGGAGCGACGC 
GAGATCGCCGTGCGCCTGCTCGACTGCGACGGACGCTGGGCCAGCGTCGAACTCGACGGCATTCGCCGCCGC 
CACGCCTACCACCTGGACGGCGGGCGCCTCTGGCTGTACGGCCACGGCGGCAACCTCGAACTGCTCGACGTC 
ACCCACGCCGGCGCCAGCGCCCAGGTCGGCGCCAGCTCCGGCACGCTCAAGGCGCCGATGGACGGCGCCATC 
GTCGAGGTGCTGGTCGGCGAGGGCGAACGGGTCGGCAAGGGCCAACTGCTGCTGGTGCTGGAGGCAATGAAG 
ATGGAACACCCGCTGAAGGCCGGAGTCGACGGCGTGGTCCGCCGCGTCCAGGTCGGCCGTGGCGAGCAGGTA 
CGCAACCGGCAGGTGCTGGTCGAGGTGGAAGCCGACGCCTGA