ViewGene
Locus Name:
GeneID:
Location:

GeneID:3718
TrivialName: PA14_43480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43480
PAO1 Ortholog Locus:PA1627
Sequence Length:648
Protein Length:215
Start: 3872515
Stop: 3873162
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05016.1|AE004590_7 (AE004590) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 214/215 (99%), Positives = 214/215 (99%)
Sequence:
GTGACCATTCCCCTCAAGCGCTCCCTGGTGGACATCGCCCTGGAGCAGATCCGCCAGCGCATCGACGCCGGC
CATTGGCCGCTCGGCCAACGCCTGCCGCCGGAGCCGGAACTCGCCGAGCTGCTCGGCATGAGCCGCAACACC
GTGCGCGAAGCGGTGCGCGTGCTGACCTTCTCCGGCGTGCTGGAAGTCCGCCAGGGCGACGGCACCTACGTG
CGCGCCTGCGCCGATCCGCTGGAAACCATGCTGGTGCTGGCGCGCAGCGCGGTGCAGCACTCCCTGGAGGCA
CGCGGGATGATCGAGATCGAGGCGGCGCGCCTGGCTGCCGTTCGCCGCGACGACAGCGACCTGAGCGCATTG
CGCGAGCATCTCGACGCTTCGCGCCAGCGCTACGGCAGCGACGACCTGCAGGACTACATCGAGCACGACGTC
CGCTTCCACCAACGGATGGTCGATGCCGCCCACAATCCGGTGCTCAGCGAACTCTACCGCTACTTCTCGCAG
GTCATCCGGACCTCGCTGGAACGCACCATGGCCGACCCACAAAGGGCCCAGCCCTGCTTCGAGCTGCACCAG
CAACTGCTCGATGCCATAGAACGCGGAGACCCGGACGCTGCCGCCGCGGCCAACCGCGCACTGCTGATCTGA
Translation:
MTIPLKRSLVDIALEQIRQRIDAGHWPLGQRLPPEPELAELLGMSRNTVREAVRVLTFSGVLEVRQGDGTYV
RACADPLETMLVLARSAVQHSLEARGMIEIEAARLAAVRRDDSDLSALREHLDASRQRYGSDDLQDYIEHDV
RFHQRMVDAAHNPVLSELYRYFSQVIRTSLERTMADPQRAQPCFELHQQLLDAIERGDPDAAAAANRALLI*
AnnotationID:3726GeneID:3718
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 15:03:40
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA1627
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2186,COG1802
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66594.1|AE016287_5 (AE016777) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 216

 Score =  213 bits (541), Expect = 8e-55
 Identities = 109/209 (52%), Positives = 148/209 (70%), Gaps = 1/209 (0%)

>gb|AAN29491.1|AE014364_8 (AE014364) transcriptional regulator, GntR family [Brucella suis
           1330]
          Length = 337

 Score =  150 bits (378), Expect = 7e-36
 Identities = 83/211 (39%), Positives = 129/211 (61%), Gaps = 6/211 (2%)

>gb|AAL52554.1| (AE009575) TRANSCRIPTIONAL REGULATOR, GNTR FAMILY [Brucella
           melitensis 16M]
          Length = 225

 Score =  149 bits (377), Expect = 9e-36
 Identities = 83/211 (39%), Positives = 128/211 (60%), Gaps = 6/211 (2%)






 
Structural Features:
COG2186, FadR, Transcriptional regulators [Transcription]
CD-Length = 241 residues,  92.1% aligned
Score =  155 bits (392), Expect = 5e-39
Identities = 85/224 (37%), Positives = 114/224 (50%), Gaps = 12/224 (5%)

COG1802, GntR, Transcriptional regulators [Transcription]
CD-Length = 230 residues,  88.3% aligned
Score =  100 bits (249), Expect = 2e-22
Identities = 71/215 (33%), Positives = 108/215 (50%), Gaps = 13/215 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14901




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24581




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37263




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3718_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3718
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5930
                           PA1627_tr
                           translation of PA1627
                           215
                           99.53
                           99.53
                           0
                           1075.0
     

     
     
165923
                           gb|AAG05016.1|AE004590_7
                           (AE004590) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           215
                           99.06
                           99.53
                           0
                           1072.0
     

     
     
165924
                           gb|AAN66594.1|AE016287_5
                           (AE016777) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           217
                           50.69
                           68.66
                           3
                           535.0
     

     
     
165925
                           gb|AAC05646.1|
                           (AF033674) unknown [Pseudomonas marginalis pv. alfalfae]
                           227
                           46.25
                           62.11
                           22
                           488.0
     

     
     
165926
                           gb|AAQ61392.1|
                           (AE016923) probable transcriptional regulator, GntR family [Chromobacterium violaceum ATCC 12472]
                           230
                           43.91
                           62.60
                           16
                           472.0
     

     






      

          
GC ORFID: 46720How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1627Glimmer Score: 

          
Start: 1081394Stop: 1080747

          
Length: 648


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1627 translation of PA1627Homolog Bit Score 418.0

          
Other Homologs:  t_PA1627 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCATTCCCCTCAAGCGCTCCCTGGTGGACATCGCCCTGGAGCAGATCCGCCAGCGCATCGACGCCGGC 
CATTGGCCGCTCGGCCAACGCCTGCCGCCGGAGCCGGAACTCGCCGAGCTGCTCGGCATGAGCCGCAACACC 
GTGCGCGAAGCGGTGCGCGTGCTGACCTTCTCCGGCGTGCTGGAAGTCCGCCAGGGCGACGGCACCTACGTG 
CGCGCCTGCGCCGATCCGCTGGAAACCATGCTGGTGCTGGCGCGCAGCGCGGTGCAGCACTCCCTGGAGGCA 
CGCGGGATGATCGAGATCGAGGCGGCGCGCCTGGCTGCCGTTCGCCGCGACGACAGCGACCTGAGCGCATTG 
CGCGAGCATCTCGACGCTTCGCGCCAGCGCTACGGCAGCGACGACCTGCAGGACTACATCGAGCACGACGTC 
CGCTTCCACCAACGGATGGTCGATGCCGCCCACAATCCGGTGCTCAGCGAACTCTACCGCTACTTCTCGCAG 
GTCATCCGGACCTCGCTGGAACGCACCATGGCCGACCCACAAAGGGCCCAGCCCTGCTTCGAGCTGCACCAG 
CAACTGCTCGATGCCATAGAACGCGGAGACCCGGACGCTGCCGCCGCGGCCAACCGCGCACTGCTGATCTGA