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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG04945.1|AE004584_1 (AE004584) probable cytochrome c oxidase subunit [Pseudomonas aeruginosa PAO1]
Identities = 202/202 (100%), Positives = 202/202 (100%)
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Sequence:
ATGAAACACGAAATACTCGAGAAGAACGTCGGCCTGCTGGCGCTATGCATGGCCGTGGCCGTGAGCATCGGC
GGCCTGACCCAGATCGTGCCGCTGTTCTTCCAGGACGTGACCAACACCCCGGTCGAAGGCATGAAGCCCTAT
ACCGCGCTGCAACTGGAAGGCCGCGACATCTATATCCGCGAAGGCTGCGTCGGCTGCCACTCGCAGATGATC
CGTCCGTTCCGCGCCGAAACCGAACGCTACGGCCACTACTCGGTGGCCGGCGAGAGCGTCTGGGACCACCCC
TTCCTGTGGGGTTCCAAGCGTACCGGTCCGGACCTGGCCCGCGTCGGTAGCCGCTACTCCGACGACTGGCAC
CGCGCGCACCTGTTCAACCCGCGCAACGTGGTGCCCGAGTCGAAGATGCCGGCCTACCCGTGGCTGGTGGAG
AACAAGCTCGACGGCAAGGACATCGAGAAGAAGCTCGAAGTGATGCGCACCCTCGGCGTGCCCTATACCGAC
GAAGACATCAAGGGCGCCAAGGACTCGCTGAAAGGCAAGACCGAAATGGATGCCGTGGTCGCCTACCTGCAG
GTGCTCGGCACCTCGATCAAGAACAAACGGTGA |
Translation:
MKHEILEKNVGLLALCMAVAVSIGGLTQIVPLFFQDVTNTPVEGMKPYTALQLEGRDIYIREGCVGCHSQMI
RPFRAETERYGHYSVAGESVWDHPFLWGSKRTGPDLARVGSRYSDDWHRAHLFNPRNVVPESKMPAYPWLVE
NKLDGKDIEKKLEVMRTLGVPYTDEDIKGAKDSLKGKTEMDAVVAYLQVLGTSIKNKR* |
AnnotationID:3725 | GeneID:3717 |
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Modification Date/Time: |
2006-02-03 14:02:44 |
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GeneProduct: | putative cytochrome c oxidase subunit |
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Synonyms: | PA1556, fixO, ccoO |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (12) Energy metabolism |
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Alternate Gene Product Name: | putative cbb3-type cytochrome oxidase, cytochrome c subunit |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN69836.1|AE016622_13 (AE016790) cytochrome c oxidase, cbb3-type, subunit II [Pseudomonas
putida KT2440]
Length = 202
Score = 372 bits (954), Expect = e-103
Identities = 173/202 (85%), Positives = 188/202 (93%)
>gb|AAN69831.1|AE016622_8 (AE016790) cytochrome c oxidase, cbb3-type, subunit II [Pseudomonas
putida KT2440]
Length = 202
Score = 365 bits (938), Expect = e-101
Identities = 169/202 (83%), Positives = 186/202 (92%)
>emb|CAD14979.1| (AL646063) PROBABLE CYTOCHROME C OXIDASE (SUBUNIT II) TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 223
Score = 294 bits (752), Expect = 3e-79
Identities = 140/200 (70%), Positives = 158/200 (79%) |
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Structural Features: | COG2993, CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit
[Energy production and conversion]
CD-Length = 227 residues, 98.2% aligned
Score = 356 bits (914), Expect = 1e-99
Identities = 149/223 (66%), Positives = 169/223 (75%), Gaps = 21/223 (9%)
pfam02433, FixO, Cytochrome C oxidase, mono-heme subunit/FixO.
CD-Length = 235 residues, 97.0% aligned
Score = 292 bits (748), Expect = 2e-80
Identities = 124/228 (54%), Positives = 150/228 (65%), Gaps = 28/228 (12%)
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