ViewGene
Locus Name:
GeneID:
Location:

GeneID:3716
TrivialName: PA14_48760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48760
PAO1 Ortholog Locus:PA1202
Sequence Length:618
Protein Length:205
Start: 4335652
Stop: 4335035
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04591.1|AE004550_7 (AE004550) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
ATGTCCTTCACCTACAAGCGACTCGACAAGAACGATGCGGCGGTGCTGTTCGTCGACCACCAGGCAGGCCTG
CTCTCCCTGGTCCGCGATTTCAGCCCGGACGAGTTCAAGAACAACGTCCTGGCATTGGCCGACATCGCCAGG
TTCTTCAACCTGCCGACCATCCTCACCACCAGCTTCGAGGACGGCCCCAACGGCCCGCTGGTGCCGGAACTC
AAGGAAATGTTCCCGCAGGCCCCGTACATCGCCCGCCCCGGCAACATCAACGCCTGGGACAACGAGGACTTC
GTCAAGGCGGTCAAGGCCACCGGCAAGAAGCAACTGATCATCGCCGGCGTGGTGACCGATGTCTGCGTAGCC
TTCCCGACCCTCTCGGCGCTGGAGGAGGGGTTTGACGTATTCGTCGTCACCGACGCCTCCGGCACCTTCAAC
CCGGTGGTGCGCGACGCCGCCTGGGCGCGCATGACCGCCGCCGGCGCGCAACTGATGAACTGGTTCAGCGTC
GGCTGCGAACTGCACCGCGACTGGCGCAACGACATCGAAGGCTTCGGTGCCATCCTCGGCGGCCACCTGCCG
GCGTACGCCAACCTGATCCAGAGCTTCGGCACGAAGAAGTAA
Translation:
MSFTYKRLDKNDAAVLFVDHQAGLLSLVRDFSPDEFKNNVLALADIARFFNLPTILTTSFEDGPNGPLVPEL
KEMFPQAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTDVCVAFPTLSALEEGFDVFVVTDASGTFN
PVVRDAAWARMTAAGAQLMNWFSVGCELHRDWRNDIEGFGAILGGHLPAYANLIQSFGTKK*
AnnotationID:3724GeneID:3716
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 09:09:48
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:ycaC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative hydrolase, isochorismatase family
Functional Category Confidence Code:5
COGs:cd01012,pfam00857,cd00431
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66336.1|AE016262_4 (AE016776) hydrolase, isochorismatase family [Pseudomonas putida
           KT2440]
          Length = 206

 Score =  338 bits (868), Expect = 9e-93
 Identities = 160/201 (79%), Positives = 175/201 (87%)

>gb|AAN79506.1|AE016758_110 (AE016758) Protein ycaC [Escherichia coli CFT073]
          Length = 241

 Score =  333 bits (854), Expect = 4e-91
 Identities = 159/203 (78%), Positives = 173/203 (85%)

>emb|CAE31681.1| (BX640440) putative isochorismatase [Bordetella bronchiseptica]
          Length = 208

 Score =  325 bits (833), Expect = 1e-88
 Identities = 154/205 (75%), Positives = 173/205 (84%)








 
Structural Features:
cd01012, YcaC_related, YcaC related amidohydrolases
CD-Length = 157 residues, 100.0% aligned
Score =  190 bits (484), Expect = 1e-49

pfam00857, Isochorismatase, Isochorismatase family.
CD-Length = 183 residues, 100.0% aligned
Score =  121 bits (306), Expect = 4e-29

cd00431, cysteine_hydrolases, Cysteine hydrolases
CD-Length = 161 residues,  99.4% aligned
Score = 95.8 bits (238), Expect = 4e-21






   
Genomic Context:






   
Comment:


















    ReferenceID:7435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24577




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37571




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3716_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3716
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5926
                           PA1202_tr
                           translation of PA1202
                           205
                           99.99
                           99.99
                           0
                           1075.0
     

     
     
165827
                           gb|AAG04591.1|AE004550_7
                           (AE004550) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           205
                           99.99
                           99.99
                           0
                           1075.0
     

     
     
165828
                           gb|AAN66336.1|AE016262_4
                           (AE016776) hydrolase, isochorismatase family [Pseudomonas putida KT2440]
                           206
                           77.66
                           84.95
                           1
                           864.0
     

     
     
165840
                           gb|AAN70820.1|AE016726_4
                           (AE016793) hydrolase, isochorismatase family [Pseudomonas putida KT2440]
                           209
                           77.03
                           82.29
                           4
                           834.0
     

     
     
165830
                           gb|AAN70808.1|AE016725_1
                           (AE016793) hydrolase, isochorismatase family [Pseudomonas putida KT2440]
                           208
                           76.92
                           84.61
                           3
                           846.0
     

     






      

          
GC ORFID: 46718How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1202Glimmer Score: 

          
Start: 618256Stop: 618873

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1202 translation of PA1202Homolog Bit Score 418.0

          
Other Homologs:  t_PA2419 (ORF: BLASTX 182.0), t_PA1202 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTCACCTACAAGCGACTCGACAAGAACGATGCGGCGGTGCTGTTCGTCGACCACCAGGCAGGCCTG 
CTCTCCCTGGTCCGCGATTTCAGCCCGGACGAGTTCAAGAACAACGTCCTGGCATTGGCCGACATCGCCAGG 
TTCTTCAACCTGCCGACCATCCTCACCACCAGCTTCGAGGACGGCCCCAACGGCCCGCTGGTGCCGGAACTC 
AAGGAAATGTTCCCGCAGGCCCCGTACATCGCCCGCCCCGGCAACATCAACGCCTGGGACAACGAGGACTTC 
GTCAAGGCGGTCAAGGCCACCGGCAAGAAGCAACTGATCATCGCCGGCGTGGTGACCGATGTCTGCGTAGCC 
TTCCCGACCCTCTCGGCGCTGGAGGAGGGGTTTGACGTATTCGTCGTCACCGACGCCTCCGGCACCTTCAAC 
CCGGTGGTGCGCGACGCCGCCTGGGCGCGCATGACCGCCGCCGGCGCGCAACTGATGAACTGGTTCAGCGTC 
GGCTGCGAACTGCACCGCGACTGGCGCAACGACATCGAAGGCTTCGGTGCCATCCTCGGCGGCCACCTGCCG 
GCGTACGCCAACCTGATCCAGAGCTTCGGCACGAAGAAGTAA