ViewGene
Locus Name:
GeneID:
Location:

GeneID:3715
TrivialName: PA14_08160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08160
PAO1 Ortholog Locus:PA0629
Sequence Length:630
Protein Length:209
Start: 700669
Stop: 701298
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04018.1|AE004498_13 (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 208/209 (99%), Positives = 208/209 (99%)
Sequence:
ATGAAACTGACCGAGCAGCAATTGCTGCGCATTTTTCCCAACGCCCGCCTCGTCGCGGGCGTTTTCGTTGTG
GCGTTGCAACGGGCCATGGACGAGAGGGAGATCGACACACCGGCGCGGTGTGCCGCGTTTCTCGCCCAGGTC
GGCCACGAAAGCAGCCAGTTGACCCGGCTGGTGGAGAACCTCAATTACAGCGCCCAAGGCTTGGCGGCGACC
TGGCCGGGTCGCTATCTCGGCCCCGACGGGCAGCCCAACGCGTTGGCCTTGCGGCTGGCGCGCAATCCGCAG
GCGATTGCCGACAACACCTACGCCACGCGCAACGGCAATGGCGACGAAGCGTCCGGCGATGGCTGGCGCTTC
CGTGGGCGTGGCTTGCTACAGATCACCGGGCGTGCCAACTACCGGTTGGTCGGAGAGGCCCTCGGCGAGCCG
CTGGAAGCCGAGCCCTGGCGCCTGGAGCAGCCCGTGCCGGCGGCCCGCAGCGCTGCCTGGTGGTGGGCCGGT
CACGGGCTCAACGAGCTGGCCGACCGCGGCGAGTTCGCTGCCATCACCCGCCGCATCAACGGCGGCCTGAAT
GGCCAGGCGGAGCGCCTGGCGTTGTGGCAGCGGGCCAGGGCGGTGCTGTCATGA
Translation:
MKLTEQQLLRIFPNARLVAGVFVVALQRAMDEREIDTPARCAAFLAQVGHESSQLTRLVENLNYSAQGLAAT
WPGRYLGPDGQPNALALRLARNPQAIADNTYATRNGNGDEASGDGWRFRGRGLLQITGRANYRLVGEALGEP
LEAEPWRLEQPVPAARSAAWWWAGHGLNELADRGEFAAITRRINGGLNGQAERLALWQRARAVLS*
AnnotationID:3723GeneID:3715
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:57
Gene Name:
Confidence Code:3
GeneProduct:putative lytic enzyme
Cell Localization:()
Synonyms:lys
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative chitinase
Functional Category Confidence Code:5
COGs:COG3179
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3179, Predicted chitinase
CD-Length = 206 residues,  99.0% aligned
Score =  248 bits (633), Expect = 5e-67
Identities = 115/209 (55%), Positives = 133/209 (63%), Gaps = 5/209 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7433




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24575




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34600




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3715_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3715
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5925
                           PA0629_tr
                           translation of PA0629
                           209
                           99.52
                           99.52
                           0
                           1078.0
     

     
     
165812
                           gb|AAG04018.1|AE004498_13
                           (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           209
                           99.52
                           99.52
                           0
                           1078.0
     

     
     
165813
                           dbj|BAA83168.1|
                           (AB030825) lytic enzyme [Pseudomonas aeruginosa]
                           209
                           99.52
                           99.52
                           0
                           1078.0
     

     
     
165814
                           dbj|BAA83137.1|
                           (AB030826) lytic enzyme [Pseudomonas aeruginosa]
                           209
                           98.08
                           98.08
                           0
                           1065.0
     

     
     
165816
                           gb|AAO57494.1|
                           (AE016870) lysozyme, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           209
                           48.32
                           57.89
                           32
                           435.0
     

     






      

          
GC ORFID: 46717How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0629Glimmer Score: 

          
Start: 6502012Stop: 6502641

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0629 translation of PA0629Homolog Bit Score 419.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2355 (ORF: BLASTX 161.0), psyr_15may02_Scaffold7_revised_gene7417 (ORF: BLASTX 151.0), t_PA0629 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTGACCGAGCAGCAATTGCTGCGCATTTTTCCCAACGCCCGCCTCGTCGCGGGCGTTTTCGTTGTG 
GCGTTGCAACGGGCCATGGACGAGAGGGAGATCGACACACCGGCGCGGTGTGCCGCGTTTCTCGCCCAGGTC 
GGCCACGAAAGCAGCCAGTTGACCCGGCTGGTGGAGAACCTCAATTACAGCGCCCAAGGCTTGGCGGCGACC 
TGGCCGGGTCGCTATCTCGGCCCCGACGGGCAGCCCAACGCGTTGGCCTTGCGGCTGGCGCGCAATCCGCAG 
GCGATTGCCGACAACACCTACGCCACGCGCAACGGCAATGGCGACGAAGCGTCCGGCGATGGCTGGCGCTTC 
CGTGGGCGTGGCTTGCTACAGATCACCGGGCGTGCCAACTACCGGTTGGTCGGAGAGGCCCTCGGCGAGCCG 
CTGGAAGCCGAGCCCTGGCGCCTGGAGCAGCCCGTGCCGGCGGCCCGCAGCGCTGCCTGGTGGTGGGCCGGT 
CACGGGCTCAACGAGCTGGCCGACCGCGGCGAGTTCGCTGCCATCACCCGCCGCATCAACGGCGGCCTGAAT 
GGCCAGGCGGAGCGCCTGGCGTTGTGGCAGCGGGCCAGGGCGGTGCTGTCATGA