ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3713

TrivialName: PA14_62920

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_62920

PAO1 Ortholog Locus: PA4757

Sequence Length: 651

Protein Length: 216

Start: 5615684

Stop: 5615034

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08143.1|AE004889_6 (AE004889) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 216/216 (100%), Positives = 216/216 (100%)

Sequence:

ATGCCGACCCTGGGGATAACCGATTTCTGGACCTACGTGCTGGGTGTGGTTTTCGTGATCCTGTTGCCCGGA
CCGAACTCGTTGTTCGTCCTCGCGACTTCGGCCCAGCGTGGCGTGGCGACCGGCTACCGGGCCGCCTGCGGC
GTGTTCCTCGGAGACGCGGTGCTGATGCTGCTGTCGGCCCTCGGTGTGGCCTCCCTGCTGAAGGCCGAGCCG
ATGCTGTTCATCGGCCTGAAGTACCTCGGTGCGGCCTACCTGTTCTATCTCGGCGTCGGCATGCTGCGGGGC
GCCTGGCGCAAGCTGCGCAATCCCGAGGCGACGGCGGCGCAGGCCGAACAGGTGGATGTCCACCAGCCGTTC
CGCAAGGCGCTGCTGCTCAGCCTGTCGAATCCCAAGGCGATCCTGTTCTTCATCTCCTTCTTCATCCAGTTC
GTCGATCCCGGCTATGCCTATCCGGGGCTGTCGTTCCTGGTGCTGGCGGTGATCCTGGAACTGGTCAGCGCC
CTTTACCTGAGCTTCCTGATTTTCACCGGTGTGCGGCTGGCGGCCTGGTTCCGCCGGCGGCAACGGTTGGCT
GCCGGCGCCACTTCGGGCGTCGGCGCCCTGTTCGTCGGCTTTGGTGTGAAGCTGGCCACCGCAACCCTGTCC
TGA

Translation:

MPTLGITDFWTYVLGVVFVILLPGPNSLFVLATSAQRGVATGYRAACGVFLGDAVLMLLSALGVASLLKAEP
MLFIGLKYLGAAYLFYLGVGMLRGAWRKLRNPEATAAQAEQVDVHQPFRKALLLSLSNPKAILFFISFFIQF
VDPGYAYPGLSFLVLAVILELVSALYLSFLIFTGVRLAAWFRRRQRLAAGATSGVGALFVGFGVKLATATLS
*

AnnotationID:3721 GeneID:3713

AnnotatorUID: diggins

Modification Date/Time: 2005-05-12 12:12:38

Gene Name:

Confidence Code: 3

GeneProduct: putative transmembrane protein

Cell Localization: ()

Synonyms: yeaS

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam01810,COG1280

Secondary Functional Category(ies): membrane protein

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAD15222.1| (AL646065) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 220

 Score =  259 bits (662), Expect = 8e-69
 Identities = 129/215 (60%), Positives = 169/215 (78%), Gaps = 3/215 (1%)

>gb|AAN80664.1|AE016761_239 (AE016761) Hypothetical protein yeaS [Escherichia coli CFT073]
          Length = 212

 Score =  201 bits (511), Expect = 3e-51
 Identities = 102/208 (49%), Positives = 146/208 (70%), Gaps = 4/208 (1%)

Structural Features:

pfam01810, LysE, LysE type translocator. 
CD-Length = 191 residues, 100.0% aligned
Score =  123 bits (311), Expect = 1e-29
Identities = 77/198 (38%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  99.5% aligned
Score =  112 bits (282), Expect = 3e-26
Identities = 86/211 (40%), Positives = 112/211 (53%), Gaps = 4/211 (1%)

Genomic Context:

Comment:

ReferenceID:7429

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24571

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37671

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3713_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3713

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5923 PA4757_tr translation of PA4757 216 99.99 99.99 0 1078.0

165795 gb|AAG08143.1|AE004889_6 (AE004889) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 216 99.99 99.99 0 1078.0

165796 gb|AAB39251.1| (U81259) orf1 [Pseudomonas aeruginosa] 216 98.61 99.07 0 1061.0

165797 gb|AAA19047.1| (U04992) unknown [Pseudomonas aeruginosa] 216 98.61 99.07 0 1061.0

165798 emb|CAD15222.1| (AL646065) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 220 58.63 76.81 4 662.0

GC ORFID: `46715`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4757`	Glimmer Score:
Start: `4879364`	Stop: `4878714`
Length: `651`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4757 translation of PA4757`	Homolog Bit Score `419.0`
Other Homologs: `t_PA4757 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCGACCCTGGGGATAACCGATTTCTGGACCTACGTGCTGGGTGTGGTTTTCGTGATCCTGTTGCCCGGA CCGAACTCGTTGTTCGTCCTCGCGACTTCGGCCCAGCGTGGCGTGGCGACCGGCTACCGGGCCGCCTGCGGC GTGTTCCTCGGAGACGCGGTGCTGATGCTGCTGTCGGCCCTCGGTGTGGCCTCCCTGCTGAAGGCCGAGCCG ATGCTGTTCATCGGCCTGAAGTACCTCGGTGCGGCCTACCTGTTCTATCTCGGCGTCGGCATGCTGCGGGGC GCCTGGCGCAAGCTGCGCAATCCCGAGGCGACGGCGGCGCAGGCCGAACAGGTGGATGTCCACCAGCCGTTC CGCAAGGCGCTGCTGCTCAGCCTGTCGAATCCCAAGGCGATCCTGTTCTTCATCTCCTTCTTCATCCAGTTC GTCGATCCCGGCTATGCCTATCCGGGGCTGTCGTTCCTGGTGCTGGCGGTGATCCTGGAACTGGTCAGCGCC CTTTACCTGAGCTTCCTGATTTTCACCGGTGTGCGGCTGGCGGCCTGGTTCCGCCGGCGGCAACGGTTGGCT GCCGGCGCCACTTCGGGCGTCGGCGCCCTGTTCGTCGGCTTTGGTGTGAAGCTGGCCACCGCAACCCTGTCC TGA