ViewGene
Locus Name:
GeneID:
Location:

GeneID:3712
TrivialName: PA14_11490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11490
PAO1 Ortholog Locus:PA4048
Sequence Length:645
Protein Length:214
Start: 995090
Stop: 995734
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07435.1|AE004821_8 (AE004821) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 214/214 (100%), Positives = 214/214 (100%)
Sequence:
ATGCTGCGGCTGTGCGTCGCCCTGTTTTCCAGCGTTCTCGCGTTGTCCTCGCTGGCCGCGCCCCAGGTGTTC
GTGGTCGGCCTGTTCCCCGGCGCGGCGGTACTCAACGTCGATGGCCAGCGCAAGCTGGTCAGGGTCGGCCAG
ACCGGCCCGCAGGGCGTCCAGGTGGTCAGCGCCGACAGCCGCAAGGCGGTGCTGCGGATCGACGGCGTCGAG
CGCACCTACGAACTGAGCCGCGAATACAACGAGGCGGGCTATTCGGCGCCGCAGCGGCAAAGCTTCAGCATC
GCTCGCGGCACCGGCGGGCACTATTGGGTGGCTGGCTCGGTGAACGGGCAGAACATGCAGTTCCTGGTGGAT
ACCGGCGCCACCAGCATCGCCATGAACGAGAACGAGGCGCGCCGCCTGGGTATCGATTACCGGGTGGACGGC
AAGCCGATGGTCGCCTCCACCGCCAGCGGCACCTCGCGCGGCTGGCGGGTGACCCTGGACCGGGTGAAGATC
GGCGGTATCGAGTTGCTGGGTGTCGAGGCGGCGGTGATCGAGGGTGGCTATCCGACCGAAGCCCTGCTCGGC
ATGAGTTTCCTCAACCGGGTGCGTTGGCGCGAGGAACAGGGAATGCTGCTTATCGAGGCCAAGCATTGA
Translation:
MLRLCVALFSSVLALSSLAAPQVFVVGLFPGAAVLNVDGQRKLVRVGQTGPQGVQVVSADSRKAVLRIDGVE
RTYELSREYNEAGYSAPQRQSFSIARGTGGHYWVAGSVNGQNMQFLVDTGATSIAMNENEARRLGIDYRVDG
KPMVASTASGTSRGWRVTLDRVKIGGIELLGVEAAVIEGGYPTEALLGMSFLNRVRWREEQGMLLIEAKH*
AnnotationID:3720GeneID:3712
AnnotatorUID: urbach
Modification Date/Time: 2004-10-06 15:03:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4048
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3577
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|12903 COG3577, COG3577, Predicted aspartyl protease
[General function prediction only]
Length = 215
Score =  223 bits (569), Expect = 3e-59
Identities = 82/215 (38%), Positives = 112/215 (52%), Gaps = 5/215 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24569




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3712
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5922
                           PA4048_tr
                           translation of PA4048
                           214
                           99.99
                           99.99
                           0
                           1077.0
     

     
     
165794
                           gb|AAG07435.1|AE004821_8
                           (AE004821) hypothetical protein PA4048 [Pseudomonas aeruginosa PAO1]
                           214
                           99.99
                           99.99
                           0
                           1077.0
     

     






      

          
GC ORFID: 46714How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4048Glimmer Score: 

          
Start: 3958847Stop: 3958203

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4048 translation of PA4048Homolog Bit Score 419.0

          
Other Homologs:  t_PA4048 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGGCTGTGCGTCGCCCTGTTTTCCAGCGTTCTCGCGTTGTCCTCGCTGGCCGCGCCCCAGGTGTTC 
GTGGTCGGCCTGTTCCCCGGCGCGGCGGTACTCAACGTCGATGGCCAGCGCAAGCTGGTCAGGGTCGGCCAG 
ACCGGCCCGCAGGGCGTCCAGGTGGTCAGCGCCGACAGCCGCAAGGCGGTGCTGCGGATCGACGGCGTCGAG 
CGCACCTACGAACTGAGCCGCGAATACAACGAGGCGGGCTATTCGGCGCCGCAGCGGCAAAGCTTCAGCATC 
GCTCGCGGCACCGGCGGGCACTATTGGGTGGCTGGCTCGGTGAACGGGCAGAACATGCAGTTCCTGGTGGAT 
ACCGGCGCCACCAGCATCGCCATGAACGAGAACGAGGCGCGCCGCCTGGGTATCGATTACCGGGTGGACGGC 
AAGCCGATGGTCGCCTCCACCGCCAGCGGCACCTCGCGCGGCTGGCGGGTGACCCTGGACCGGGTGAAGATC 
GGCGGTATCGAGTTGCTGGGTGTCGAGGCGGCGGTGATCGAGGGTGGCTATCCGACCGAAGCCCTGCTCGGC 
ATGAGTTTCCTCAACCGGGTGCGTTGGCGCGAGGAACAGGGAATGCTGCTTATCGAGGCCAAGCATTGA