ViewGene
Locus Name:
GeneID:
Location:

GeneID:3711
TrivialName: PA14_14000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14000
PAO1 Ortholog Locus:PA3864
Sequence Length:633
Protein Length:210
Start: 1200689
Stop: 1200057
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07251.1|AE004803_7 (AE004803) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/210 (99%), Positives = 210/210 (100%)
Sequence:
ATGAGCCCGAGCCAAGACCCCAGCCTGGAGAACTACCGGGCGATCGCCGACGGCATCGCCACCCTGTTCTTC
CCCCACGCCGAAGTGGTCCTGCACGACCTGCGCAGCCAGCGGGTCGACTACATCGCCAACAACCTGTCCAAG
CGCGAGGTCGGCGACGACTCGGCGCTGGAAGACATGCTCGAAGGCGATAGCGACGAGCGCAACATCGGTCCC
TACGAGAAGCTCAACTGGGACGGGCAGAAGATCCGCTCGGTCAGCACCGTGCTGCGCGACGCCGCCGGCCAG
CCGCTGGCGGTGCTGTGCATCAACCTGAATATCAGCCTGTTCGAGAGCGCCAAGGCGGCGCTCGACCTGTTC
CTCTCGCCGAGCAAGCTGATCCCGCAACCGGACGCGCTGTTCCGCGACGACTGGCAGGAGCGCATCAACACC
TTCCTGCACGGCTGGCTGCGGCAGCGCCAGCTCGGCTTGAACCTGCTGACCCGCGAGCACAAGCGCGAACTG
GTCCTGGCCCTGCACGCCGAGGGCGCGTTCAAGGGCAAGAGCGCCGCCAACTATGTGGCCAACGTGCTGAAC
ATGGGCCGGGCGACGGTCTACAAGCACCTCAAGGAGCTGAAGGAAGGCGGCGACTGA
Translation:
MSPSQDPSLENYRAIADGIATLFFPHAEVVLHDLRSQRVDYIANNLSKREVGDDSALEDMLEGDSDERNIGP
YEKLNWDGQKIRSVSTVLRDAAGQPLAVLCINLNISLFESAKAALDLFLSPSKLIPQPDALFRDDWQERINT
FLHGWLRQRQLGLNLLTREHKRELVLALHAEGAFKGKSAANYVANVLNMGRATVYKHLKELKEGGD*
AnnotationID:3719GeneID:3711
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 08:08:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3864
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7425




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24567




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31700




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3711_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3711
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5921
                           PA3864_tr
                           translation of PA3864
                           210
                           99.52
                           99.99
                           0
                           1077.0
     

     
     
165789
                           gb|AAG07251.1|AE004803_7
                           (AE004803) hypothetical protein PA3864 [Pseudomonas aeruginosa PAO1]
                           210
                           99.52
                           99.99
                           0
                           1077.0
     

     
     
165790
                           gb|AAQ60915.1|
                           (AE016921) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           216
                           60.18
                           71.75
                           7
                           660.0
     

     
     
165791
                           gb|AAN68800.1|AE016512_6
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           214
                           57.47
                           73.83
                           17
                           639.0
     

     
     
165792
                           gb|AAK64919.1|
                           (AE007219) conserved hypothetical protein [Sinorhizobium meliloti]
                           228
                           44.29
                           59.64
                           24
                           484.0
     

     






      

          
GC ORFID: 46713How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3864Glimmer Score: 

          
Start: 3753249Stop: 3753881

          
Length: 633


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3864 translation of PA3864Homolog Bit Score 419.0

          
Other Homologs:  t_PA3864 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCCGAGCCAAGACCCCAGCCTGGAGAACTACCGGGCGATCGCCGACGGCATCGCCACCCTGTTCTTC 
CCCCACGCCGAAGTGGTCCTGCACGACCTGCGCAGCCAGCGGGTCGACTACATCGCCAACAACCTGTCCAAG 
CGCGAGGTCGGCGACGACTCGGCGCTGGAAGACATGCTCGAAGGCGATAGCGACGAGCGCAACATCGGTCCC 
TACGAGAAGCTCAACTGGGACGGGCAGAAGATCCGCTCGGTCAGCACCGTGCTGCGCGACGCCGCCGGCCAG 
CCGCTGGCGGTGCTGTGCATCAACCTGAATATCAGCCTGTTCGAGAGCGCCAAGGCGGCGCTCGACCTGTTC 
CTCTCGCCGAGCAAGCTGATCCCGCAACCGGACGCGCTGTTCCGCGACGACTGGCAGGAGCGCATCAACACC 
TTCCTGCACGGCTGGCTGCGGCAGCGCCAGCTCGGCTTGAACCTGCTGACCCGCGAGCACAAGCGCGAACTG 
GTCCTGGCCCTGCACGCCGAGGGCGCGTTCAAGGGCAAGAGCGCCGCCAACTATGTGGCCAACGTGCTGAAC 
ATGGGCCGGGCGACGGTCTACAAGCACCTCAAGGAGCTGAAGGAAGGCGGCGACTGA