ViewGene

Locus Name:
GeneID:
Location:

GeneID: 371

TrivialName: PA14_59200

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_59200

PAO1 Ortholog Locus:

Sequence Length: 1890

Protein Length: 629

Start: 5270777

Stop: 5272666

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP84215.1| (AY273869) hypothetical protein RL090 [Pseudomonas aeruginosa] Identities = 629/629 (100%), Positives = 629/629 (100%)

Sequence:

GTGGCACCTCTCGACAACGCCCCCCCTAGCGGGCCGCTACAGGATCCATCCCTGGCCCGCTACAGCGAGCGG
CAGCTCGCCGTCGCCAACACCTGGGCAACACATTTCTCCCTCGCAGGGACAGCTCGAACCAAGTTCATCCGT
CACTACCTGCGCAGCACATCTACGACCAGGTGCTGGTGCATCACAGTCGCTGCTGACAACGGTGTGCGTTAC
ACCATCATGCGTGCAGGGCCGCTACTCCAGGTATTCGACGGTCAACTAATTGGTGCGTGGGAGTGCAAGCCT
GCCCATCGTATCCCGGCAAGCACGCCGTCTCGAGCAGGGGCCTTGAAGCTGCTACAGCGCCTTCAAAAGTTC
GACGACGCAGTTGCTGTACTCAGCTCATACACAAAGCGAGCGCACGACCTAGCCACACAGATGGCCAGGGAC
GATCTCGGACTTCAACATCGCCTCGTGTATCCGAGCCACAGCAACAAGCGCTACTACGCGCCAAGGCACCAG
TTCTACTTGAAGCAGATCGGAGCGGTCTTGCGAACCTTCAGACAGGTCCTGGACCAAGACCTGCTGTTCGCC
ATCCGCTCGGTTCGGTGCCTCTCGCCCCAGCTCTACAACTGGCTGGCTCAAGGCGACCAGGTGCGCCGGCTG
CAAATGCTGAAGGCTCAGCCGGTCTTGACGCCGCTACTGGTGGATTGCGAGGAGGGAGTCTGGCCTCACACG
ACGACCAACGACAACGGCGAGAGCATCCGCCATTACCTTCCTTGCCCCTTTCCCCAGCTTGACAGTGAACGA
CCGCAGGCCGCCGCCATGCCATGCGACTTGTACCTCGATATGGGCCGTATTCTTGGGCAGGTCGCGGACGAA
GGAATTTCGGTCATCAACTTTTTCGCCTGGCTATTTCAGGCGCCGCGGGCCTCGATTCGATTTCTTAGTCAC
GTCAGTCCCGGCCGTGCGGGAGGAGCTCTCTTCCATCGCAAACGGGAAGGCCGACATTCGGGATGGCATGCT
CTCCTACTGGCGGCATCGCTAGGTAACCGGCGGCCGATCACTCGCGCTCAATGGACAGCATTCTATGCCGCC
TACAATGCGATCCCTTGGCAAGTTCACAACGCCAAGCCCGACTACAACCGTCTCTTCAACGGCTGCCCGTCG
GATTGGCAGGATCCGGCATGGCTTGCAATCACTGCACGGCTGAGAGACATCAAGGAGTTCTATACCGCCCTC
GACCAGGGGAACTCACAGGTTGTTCGGCAGGCGCGCAGCGCCCTGAAAGCGTATCTGGGTCATTGTACCTAC
CGACAAGCTGGCAACCTGGTGGACGACTACCACCAGGTCCAGAGGGAGCTGCGTGCCGCAGTGCAGAGCAGC
CTGCCCGATCTGGTCGACACCGACGAGTACACCACCTGGGAGGGAATGCTGTCTGTCGGTCTTATCGATTGC
CCTAATGGACTGCAGATCGTCGAGCTCCGCTGTCCTGCCGACCTATATGCCGAACATATCGCTCTGGCACAT
TGCATCGATAGCTACGACCAGGCCGCCTACCGAGGAGACTGCCGACTGCTCTCAGTACGTGAGGCTGGTCGT
CCGCTGGCCTCTGCCGAATTGGAGCTCAGGCGTGAGCATGGCGAGCCTATAGGTAGGCCCTGGAGTCCCAAG
CACCTTTCCACGGTGCAACTGCGCGAATTCGATAATGCCCCCGTGCCGACCGACTCGCCTGCCGGCCAGGCA
TACCGCTGGTTCATGGAACGAATTCGCTCTGGAGCCATAGCGACGAACCTGAACTGGCCCGACATGACCGTC
CACATGACGCGCTTCGCCAATGGTCGCTGGAAGGCGGGCCTCGCCGAAGCCACGGCGAAGTGGCTGCTCACT
CAGTTGGAAGACCGATGA

Translation:

MAPLDNAPPSGPLQDPSLARYSERQLAVANTWATHFSLAGTARTKFIRHYLRSTSTTRCWCITVAADNGVRY
TIMRAGPLLQVFDGQLIGAWECKPAHRIPASTPSRAGALKLLQRLQKFDDAVAVLSSYTKRAHDLATQMARD
DLGLQHRLVYPSHSNKRYYAPRHQFYLKQIGAVLRTFRQVLDQDLLFAIRSVRCLSPQLYNWLAQGDQVRRL
QMLKAQPVLTPLLVDCEEGVWPHTTTNDNGESIRHYLPCPFPQLDSERPQAAAMPCDLYLDMGRILGQVADE
GISVINFFAWLFQAPRASIRFLSHVSPGRAGGALFHRKREGRHSGWHALLLAASLGNRRPITRAQWTAFYAA
YNAIPWQVHNAKPDYNRLFNGCPSDWQDPAWLAITARLRDIKEFYTALDQGNSQVVRQARSALKAYLGHCTY
RQAGNLVDDYHQVQRELRAAVQSSLPDLVDTDEYTTWEGMLSVGLIDCPNGLQIVELRCPADLYAEHIALAH
CIDSYDQAAYRGDCRLLSVREAGRPLASAELELRREHGEPIGRPWSPKHLSTVQLREFDNAPVPTDSPAGQA
YRWFMERIRSGAIATNLNWPDMTVHMTRFANGRWKAGLAEATAKWLLTQLEDR*

AnnotationID:380 GeneID:371

AnnotatorUID: diggins

Modification Date/Time: 2006-01-25 07:07:59

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:14123

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17887

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:371

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

29028 gb|AAP84215.1| (AY273869) hypothetical protein RL090 [Pseudomonas aeruginosa] 629 99.84 99.99 0 3360.0

GC ORFID: `43373`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_RL090`	Glimmer Score:
Start: `4534456`	Stop: `4536345`
Length: `1890`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_RL090 629 Homolog: No significant similarity () translation of RL090`	Homolog Bit Score `1300.0`
Other Homologs: `psyr_15may02_Scaffold10_revised_gene158 (ORF: BLASTX 447.0), t_RL090 (ORF: GLIMMER)`
GC ORF Sequence
GTGGCACCTCTCGACAACGCCCCCCCTAGCGGGCCGCTACAGGATCCATCCCTGGCCCGCTACAGCGAGCGG CAGCTCGCCGTCGCCAACACCTGGGCAACACATTTCTCCCTCGCAGGGACAGCTCGAACCAAGTTCATCCGT CACTACCTGCGCAGCACATCTACGACCAGGTGCTGGTGCATCACAGTCGCTGCTGACAACGGTGTGCGTTAC ACCATCATGCGTGCAGGGCCGCTACTCCAGGTATTCGACGGTCAACTAATTGGTGCGTGGGAGTGCAAGCCT GCCCATCGTATCCCGGCAAGCACGCCGTCTCGAGCAGGGGCCTTGAAGCTGCTACAGCGCCTTCAAAAGTTC GACGACGCAGTTGCTGTACTCAGCTCATACACAAAGCGAGCGCACGACCTAGCCACACAGATGGCCAGGGAC GATCTCGGACTTCAACATCGCCTCGTGTATCCGAGCCACAGCAACAAGCGCTACTACGCGCCAAGGCACCAG TTCTACTTGAAGCAGATCGGAGCGGTCTTGCGAACCTTCAGACAGGTCCTGGACCAAGACCTGCTGTTCGCC ATCCGCTCGGTTCGGTGCCTCTCGCCCCAGCTCTACAACTGGCTGGCTCAAGGCGACCAGGTGCGCCGGCTG CAAATGCTGAAGGCTCAGCCGGTCTTGACGCCGCTACTGGTGGATTGCGAGGAGGGAGTCTGGCCTCACACG ACGACCAACGACAACGGCGAGAGCATCCGCCATTACCTTCCTTGCCCCTTTCCCCAGCTTGACAGTGAACGA CCGCAGGCCGCCGCCATGCCATGCGACTTGTACCTCGATATGGGCCGTATTCTTGGGCAGGTCGCGGACGAA GGAATTTCGGTCATCAACTTTTTCGCCTGGCTATTTCAGGCGCCGCGGGCCTCGATTCGATTTCTTAGTCAC GTCAGTCCCGGCCGTGCGGGAGGAGCTCTCTTCCATCGCAAACGGGAAGGCCGACATTCGGGATGGCATGCT CTCCTACTGGCGGCATCGCTAGGTAACCGGCGGCCGATCACTCGCGCTCAATGGACAGCATTCTATGCCGCC TACAATGCGATCCCTTGGCAAGTTCACAACGCCAAGCCCGACTACAACCGTCTCTTCAACGGCTGCCCGTCG GATTGGCAGGATCCGGCATGGCTTGCAATCACTGCACGGCTGAGAGACATCAAGGAGTTCTATACCGCCCTC GACCAGGGGAACTCACAGGTTGTTCGGCAGGCGCGCAGCGCCCTGAAAGCGTATCTGGGTCATTGTACCTAC CGACAAGCTGGCAACCTGGTGGACGACTACCACCAGGTCCAGAGGGAGCTGCGTGCCGCAGTGCAGAGCAGC CTGCCCGATCTGGTCGACACCGACGAGTACACCACCTGGGAGGGAATGCTGTCTGTCGGTCTTATCGATTGC CCTAATGGACTGCAGATCGTCGAGCTCCGCTGTCCTGCCGACCTATATGCCGAACATATCGCTCTGGCACAT TGCATCGATAGCTACGACCAGGCCGCCTACCGAGGAGACTGCCGACTGCTCTCAGTACGTGAGGCTGGTCGT CCGCTGGCCTCTGCCGAATTGGAGCTCAGGCGTGAGCATGGCGAGCCTATAGGTAGGCCCTGGAGTCCCAAG CACCTTTCCACGGTGCAACTGCGCGAATTCGATAATGCCCCCGTGCCGACCGACTCGCCTGCCGGCCAGGCA TACCGCTGGTTCATGGAACGAATTCGCTCTGGAGCCATAGCGACGAACCTGAACTGGCCCGACATGACCGTC CACATGACGCGCTTCGCCAATGGTCGCTGGAAGGCGGGCCTCGCCGAAGCCACGGCGAAGTGGCTGCTCACT CAGTTGGAAGACCGATGA