ViewGene
Locus Name:
GeneID:
Location:

GeneID:3709
TrivialName: PA14_45370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45370
PAO1 Ortholog Locus:PA1476
Sequence Length:672
Protein Length:223
Start: 4041938
Stop: 4041267
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04865.1|AE004576_14 (AE004576) heme exporter protein CcmB [Pseudomonas aeruginosa PAO1]
Identities = 222/223 (99%), Positives = 223/223 (100%)
Sequence:
ATGAGCAACGTCTTCAGCCTGCTTCTGGCGCGCGAGGCGCGCCTGCTGTTCCGCCGACCGGCGGAGCTGGCC
AACCCGCTGGTGTTCTTCGCCATCGTCATCGCCCTGTTCCCCCTGGCGGTCGGGCCGGAAAGCCAATTGCTA
CAAACCTTGTCGCCCGGCCTGGTCTGGGTGGCGGCGCTATTGGCCGTGCTGCTCTCGCTGGAAGGGCTGTTC
CGCAGCGATTTCGAGGACGGTTCTCTGGAGCAGTGGGTCCTTTCGCCGCACCCCCTGGCTCTTCTGGTGCTG
GCCAAGGTGCTGGCACACTGGCTGTTTTCCGGGCTGGCCCTGGTCCTGATGTCGCCGCTGTTCGCGCTGATG
CTGGGCCTGCCGGCCCGTTGCATACCGGTGCTGCTGCTTTCCCTGTTGCTCGGTACGCCGGTGCTGAGCCTG
CTCGGCGCCGTCGGCGCGGCCTTGACCGTGGGCCTCAAGCGCGGCGGCCTGTTGCTGGCGCTGCTGATCCTG
CCGCTGTACATCCCGGTGCTGATTCTCGGTAGCGGGGCGCTGCAGGCTTCGCTGCAGGGACTGCCCAGCAGC
GGACATTTATTGTGGCTGGCGAGCCTGACGGCGCTAGCATTGACACTCACGCCATTCGCCATCGCTGCCGGC
CTGAAGATCAGCGTAGGCGAGTGA
Translation:
MSNVFSLLLAREARLLFRRPAELANPLVFFAIVIALFPLAVGPESQLLQTLSPGLVWVAALLAVLLSLEGLF
RSDFEDGSLEQWVLSPHPLALLVLAKVLAHWLFSGLALVLMSPLFALMLGLPARCIPVLLLSLLLGTPVLSL
LGAVGAALTVGLKRGGLLLALLILPLYIPVLILGSGALQASLQGLPSSGHLLWLASLTALALTLTPFAIAAG
LKISVGE*
AnnotationID:3717GeneID:3709
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 16:04:03
Gene Name:ccmB
Confidence Code:2
GeneProduct:heme exporter protein CcmB
Cell Localization:()
Synonyms:cyt10; cycW; helB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2386
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7421




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17011




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1476_CDS.cgi


    		




 
URL:

















    ReferenceID:24563




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3709
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5918
                           PA1476_tr
                           translation of PA1476
                           223
                           99.55
                           99.99
                           0
                           1078.0
     

     
     
165680
                           gb|AAG04865.1|AE004576_14
                           (AE004576) heme exporter protein CcmB [Pseudomonas aeruginosa PAO1]
                           223
                           99.55
                           99.99
                           0
                           1078.0
     

     
     
165681
                           gb|AAN69905.1|AE016629_7
                           (AE016790) heme ABC export system, permease protein CcmB [Pseudomonas putida KT2440]
                           223
                           89.23
                           95.51
                           1
                           986.0
     

     
     
165682
                           emb|CAA10528.1|
                           (AJ131925) CcmB protein [Pseudomonas putida]
                           223
                           88.78
                           95.06
                           1
                           981.0
     

     
     
165684
                           gb|AAC63582.1|
                           (U85716) CCMB [Pseudomonas putida GB-1]
                           223
                           85.20
                           91.47
                           3
                           906.0
     

     






      

          
GC ORFID: 46711How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1476Glimmer Score: 

          
Start: 911971Stop: 912642

          
Length: 672


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1476 translation of PA1476Homolog Bit Score 419.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2226 (ORF: BLASTX 379.0), t_PA1476 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACGTCTTCAGCCTGCTTCTGGCGCGCGAGGCGCGCCTGCTGTTCCGCCGACCGGCGGAGCTGGCC 
AACCCGCTGGTGTTCTTCGCCATCGTCATCGCCCTGTTCCCCCTGGCGGTCGGGCCGGAAAGCCAATTGCTA 
CAAACCTTGTCGCCCGGCCTGGTCTGGGTGGCGGCGCTATTGGCCGTGCTGCTCTCGCTGGAAGGGCTGTTC 
CGCAGCGATTTCGAGGACGGTTCTCTGGAGCAGTGGGTCCTTTCGCCGCACCCCCTGGCTCTTCTGGTGCTG 
GCCAAGGTGCTGGCACACTGGCTGTTTTCCGGGCTGGCCCTGGTCCTGATGTCGCCGCTGTTCGCGCTGATG 
CTGGGCCTGCCGGCCCGTTGCATACCGGTGCTGCTGCTTTCCCTGTTGCTCGGTACGCCGGTGCTGAGCCTG 
CTCGGCGCCGTCGGCGCGGCCTTGACCGTGGGCCTCAAGCGCGGCGGCCTGTTGCTGGCGCTGCTGATCCTG 
CCGCTGTACATCCCGGTGCTGATTCTCGGTAGCGGGGCGCTGCAGGCTTCGCTGCAGGGACTGCCCAGCAGC 
GGACATTTATTGTGGCTGGCGAGCCTGACGGCGCTAGCATTGACACTCACGCCATTCGCCATCGCTGCCGGC 
CTGAAGATCAGCGTAGGCGAGTGA