ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3707

TrivialName: PA14_61320

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_61320

PAO1 Ortholog Locus: PA4634

Sequence Length: 615

Protein Length: 204

Start: 5475221

Stop: 5474607

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08022.1|AE004877_9 (AE004877) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 201/204 (98%), Positives = 201/204 (98%)

Sequence:

ATGAGTGGTCGTTACGCCCTGTTCCGCTGGAATCCGTCGCTGGCGGCCCTGCCGGGCTTTCCGGCGGATTGG
CGGGCGCACTGGAACATTTCTCCGGCGAACCAGGTGCTGATGGTTCGCGAGGACGCCGGTGCGCGCCGCGCC
GACCTGGCGCGCTGGGGGTTGACCCCGGCCTGGCTCACCGACCTGTCGCGTACGCCCAGCCACGCGCGGGCG
GAAACCCTCGCCGAGCAACCGATGTTCCGCGAGGCGTTCCAGCAGCGCCGCTGCCTGCTGCCGGCCAACGGC
TTCTATGAATGGCGCGGGGTGCGCAAGCGTCCGTACTGGGTTTCCACCGGCGAGCGCCTGTTGTTCTTCGCC
GGCATCTGGGAGGCCTATCCGGTGCAGGGACAGACCTGGCTCAGCGTGGCCCAGGTATCCCAGGCGGCCGCC
GAGTTCCGCCGGCCGCTGCTGCTTGACGAGGCCGAGCAGGATGCCTGGCTGGCTCCGGACACGCCGCTGCCG
GCGCTGATCAGCCTGCTCGCCAAGCCCCAGCCGAACCTGCGCAGCGTGGCCCTGGCCGGCTTCGTCAACAAG
CCTGAAACCGACGGGCCGGAGTGCCTGACCCCGGCCTGA

Translation:

MSGRYALFRWNPSLAALPGFPADWRAHWNISPANQVLMVREDAGARRADLARWGLTPAWLTDLSRTPSHARA
ETLAEQPMFREAFQQRRCLLPANGFYEWRGVRKRPYWVSTGERLLFFAGIWEAYPVQGQTWLSVAQVSQAAA
EFRRPLLLDEAEQDAWLAPDTPLPALISLLAKPQPNLRSVALAGFVNKPETDGPECLTPA*

AnnotationID:3715 GeneID:3707

AnnotatorUID: diggins

Modification Date/Time: 2005-05-06 14:02:25

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4634

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:7417

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24559

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31588

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3707cdd.html

URL:

Homologs By Global Alignment

Gene ID:3707

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5915 PA4634_tr translation of PA4634 204 98.52 98.52 0 1080.0

165658 gb|AAG08022.1|AE004877_9 (AE004877) hypothetical protein PA4634 [Pseudomonas aeruginosa PAO1] 204 98.52 98.52 0 1080.0

165659 gb|AAN66383.1|AE016266_5 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 206 67.47 76.69 2 724.0

165660 gb|AAO54672.1| (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 209 66.50 76.07 5 708.0

GC ORFID: `46709`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4634`	Glimmer Score:
Start: `4738901`	Stop: `4738287`
Length: `615`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4634 translation of PA4634`	Homolog Bit Score `420.0`
Other Homologs: `psyr_15may02_Scaffold3_revised_gene4318 (ORF: BLASTX 280.0), t_PA4634 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTGGTCGTTACGCCCTGTTCCGCTGGAATCCGTCGCTGGCGGCCCTGCCGGGCTTTCCGGCGGATTGG CGGGCGCACTGGAACATTTCTCCGGCGAACCAGGTGCTGATGGTTCGCGAGGACGCCGGTGCGCGCCGCGCC GACCTGGCGCGCTGGGGGTTGACCCCGGCCTGGCTCACCGACCTGTCGCGTACGCCCAGCCACGCGCGGGCG GAAACCCTCGCCGAGCAACCGATGTTCCGCGAGGCGTTCCAGCAGCGCCGCTGCCTGCTGCCGGCCAACGGC TTCTATGAATGGCGCGGGGTGCGCAAGCGTCCGTACTGGGTTTCCACCGGCGAGCGCCTGTTGTTCTTCGCC GGCATCTGGGAGGCCTATCCGGTGCAGGGACAGACCTGGCTCAGCGTGGCCCAGGTATCCCAGGCGGCCGCC GAGTTCCGCCGGCCGCTGCTGCTTGACGAGGCCGAGCAGGATGCCTGGCTGGCTCCGGACACGCCGCTGCCG GCGCTGATCAGCCTGCTCGCCAAGCCCCAGCCGAACCTGCGCAGCGTGGCCCTGGCCGGCTTCGTCAACAAG CCTGAAACCGACGGGCCGGAGTGCCTGACCCCGGCCTGA