ViewGene
Locus Name:
GeneID:
Location:

GeneID:3706
TrivialName: PA14_57840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57840
PAO1 Ortholog Locus:PA4453
Sequence Length:648
Protein Length:215
Start: 5150390
Stop: 5149743
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07841.1|AE004859_10 (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 215/215 (100%), Positives = 215/215 (100%)
Sequence:
ATGCTGACTCTTCTGCGTCGCGGCCTGCTGGTGTTCCTGGCGGCTTTCCCGCTGCTTTCCATGGCGGCGCCG
ACCCCGCAACAGGTGGTGCAGGGCACGGTCGACGAGCTGCTTTCCGACATCAAGGCCAACAAGGCCGCCTAC
AAGGCCGATCCGCAAAAGCTCTACGCCACTCTCGACCGTATCCTCGGGCCGGTGGTCGATGCCGAGGGCATC
GCCAAGAGCGTGATGACCGTCAAGTATTCGCGCCAGGCCTCACCCGAGCAGATCAAGCGCTTCGAGGAAGTG
TTCAAGAACAGCCTGATGCAGTTCTACGGCAACGCGCTGCTCGAATACGACAACCAGGACATCCGCGTGCTG
CCTAGCTCGGCCAAGCCGAGCGACGATCGCGCCAGCGTCAACATGGAGATCCGTGACAGCAAGGGCACGGTC
TACCCGGTCTCCTACACCATGACCAACCTGGCCGGTGGCTGGAAGGTCCGCAACGTGATCATCAACGGCATC
AACATCGGCAAGCTGTTCCGCGACCAGTTCGCCGACACCATGCAGAAGAACCGCAACGACCTCGAGAAGACC
ATCGCCGGCTGGGGCGAGGTGGTCGCCAAGGCCAAGGAAACCGCGAAAGCGGAAGAGGCCGGGGCGAAATGA
Translation:
MLTLLRRGLLVFLAAFPLLSMAAPTPQQVVQGTVDELLSDIKANKAAYKADPQKLYATLDRILGPVVDAEGI
AKSVMTVKYSRQASPEQIKRFEEVFKNSLMQFYGNALLEYDNQDIRVLPSSAKPSDDRASVNMEIRDSKGTV
YPVSYTMTNLAGGWKVRNVIINGINIGKLFRDQFADTMQKNRNDLEKTIAGWGEVVAKAKETAKAEEAGAK*
AnnotationID:3714GeneID:3706
AnnotatorUID: diggins
Modification Date/Time: 2005-05-20 09:09:03
Gene Name:
Confidence Code:3
GeneProduct:putative toluene tolerance protein
Cell Localization:()
Synonyms:ttg2D
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2854,pfam05494
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2854, Ttg2D, ABC-type transport system involved in resistance 
to organic solvents, auxiliary component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 202 residues,  98.5% aligned
Score =  193 bits (491), Expect = 4e-50
Identities = 71/206 (34%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

pfam05494, Tol_Tol_Ttg2, Toluene tolerance, Ttg2.
CD-Length = 182 residues, 100.0% aligned
Score =  180 bits (458), Expect = 2e-46
Identities = 77/189 (40%), Positives = 105/189 (55%), Gaps = 9/189 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7415




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31492




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3706_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3706
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5914
                           PA4453_tr
                           translation of PA4453
                           215
                           99.99
                           99.99
                           0
                           1079.0
     

     
     
165653
                           gb|AAG07841.1|AE004859_10
                           (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           215
                           99.99
                           99.99
                           0
                           1079.0
     

     
     
165654
                           gb|AAD17960.1|
                           (AF106002) toluene tolerance protein Ttg2D [Pseudomonas putida]
                           218
                           65.13
                           78.44
                           6
                           709.0
     

     
     
165655
                           gb|AAN66586.1|AE016286_10
                           (AE016777) toluene-tolerance protein [Pseudomonas putida KT2440]
                           218
                           63.76
                           78.89
                           6
                           704.0
     

     
     
165656
                           gb|AAO57893.1|
                           (AE016872) toluene tolerance protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           217
                           58.98
                           75.57
                           3
                           656.0
     

     






      

          
GC ORFID: 46708How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4453Glimmer Score: 

          
Start: 4414069Stop: 4413422

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4453 translation of PA4453Homolog Bit Score 420.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5522 (ORF: BLASTX 257.0), t_PA4453 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACTCTTCTGCGTCGCGGCCTGCTGGTGTTCCTGGCGGCTTTCCCGCTGCTTTCCATGGCGGCGCCG 
ACCCCGCAACAGGTGGTGCAGGGCACGGTCGACGAGCTGCTTTCCGACATCAAGGCCAACAAGGCCGCCTAC 
AAGGCCGATCCGCAAAAGCTCTACGCCACTCTCGACCGTATCCTCGGGCCGGTGGTCGATGCCGAGGGCATC 
GCCAAGAGCGTGATGACCGTCAAGTATTCGCGCCAGGCCTCACCCGAGCAGATCAAGCGCTTCGAGGAAGTG 
TTCAAGAACAGCCTGATGCAGTTCTACGGCAACGCGCTGCTCGAATACGACAACCAGGACATCCGCGTGCTG 
CCTAGCTCGGCCAAGCCGAGCGACGATCGCGCCAGCGTCAACATGGAGATCCGTGACAGCAAGGGCACGGTC 
TACCCGGTCTCCTACACCATGACCAACCTGGCCGGTGGCTGGAAGGTCCGCAACGTGATCATCAACGGCATC 
AACATCGGCAAGCTGTTCCGCGACCAGTTCGCCGACACCATGCAGAAGAACCGCAACGACCTCGAGAAGACC 
ATCGCCGGCTGGGGCGAGGTGGTCGCCAAGGCCAAGGAAACCGCGAAAGCGGAAGAGGCCGGGGCGAAATGA