ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3705

TrivialName: PA14_09450

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09450

PAO1 Ortholog Locus: PA4213

Sequence Length: 624

Protein Length: 207

Start: 810879

Stop: 810256

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07600.1|AE004838_4 (AE004838) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1] Identities = 207/207 (100%), Positives = 207/207 (100%)

Sequence:

ATGAGCGGCATTCCCGAAATCACCGCCTATCCCTTGCCGACCGCCCAGCAGCTGCCGGCCAACCTGGCGCGC
TGGAGCCTGGAGCCGCGGCGCGCGGTGCTGCTGGTGCACGACATGCAGCGCTACTTCCTGCGCCCGCTGCCC
GAGAGCCTGCGCGCCGGGCTGGTGGCCAACGCCGCGCGGCTGCGCCGCTGGTGCGTCGAGCAGGGCGTGCAG
ATCGCCTACACCGCCCAGCCGGGCAGCATGACCGAGGAGCAGCGCGGCCTGCTCAAGGACTTCTGGGGGCCG
GGCATGCGCGCCAGTCCGGCCGACCGCGAGGTGGTCGAGGAGCTGGCGCCGGGGCCGGACGACTGGCTGCTG
ACCAAGTGGCGCTACAGCGCCTTCTTCCACTCCGACCTGCTCCAGCGGATGCGCGCCGCCGGCCGCGACCAG
TTGGTGCTGTGCGGCGTATACGCCCACGTCGGGGTGCTGATCTCCACGGTCGACGCCTACTCCAACGACATC
CAGCCGTTCCTGGTGGCCGACGCCATCGCCGACTTCAGCGAGGCGCACCACCGCATGGCCCTGGAATACGCC
GCCAGCCGCTGCGCGATGGTGGTCACCACCGACGAGGTGCTGGAATGA

Translation:

MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQ
IAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQ
LVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE*

AnnotationID:3713 GeneID:3705

AnnotatorUID: danlee

Modification Date/Time: 2003-11-12 16:04:06

Gene Name: phzD1

Confidence Code: 1

GeneProduct: phenazine biosynthesis protein PhzD

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (23) Secreted Factors (toxins, enzymes, alginate)

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Phenazine biosynthesis.

Homology:

corresponds to PA4213 of PAO1 (based on sequence and genomic context).

Structural Features:

Genomic Context:

Comment:

ReferenceID:7413

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24555

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3705

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5912 PA4213_tr translation of PA4213 207 99.99 99.99 0 1080.0

5913 PA1902_tr translation of PA1902 207 99.99 99.99 0 1080.0

165609 gb|AAG07600.1|AE004838_4 (AE004838) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1] 207 99.99 99.99 0 1080.0

165610 gb|AAG05291.1|AE004616_5 (AE004616) phenazine biosynthesis protein PhzD [Pseudomonas aeruginosa PAO1] 207 99.99 99.99 0 1080.0

165611 gb|AAC64487.1| (AF005404) PhzD [Pseudomonas aeruginosa] 207 99.99 99.99 0 1080.0

GC ORFID: `46707`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4213`	Glimmer Score:
Start: `4143058`	Stop: `4143681`
Length: `624`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4213 translation of PA4213`	Homolog Bit Score `420.0`
Other Homologs: `t_PA1902 (ORF: BLASTX 420.0), t_PA4213 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGGCATTCCCGAAATCACCGCCTATCCCTTGCCGACCGCCCAGCAGCTGCCGGCCAACCTGGCGCGC TGGAGCCTGGAGCCGCGGCGCGCGGTGCTGCTGGTGCACGACATGCAGCGCTACTTCCTGCGCCCGCTGCCC GAGAGCCTGCGCGCCGGGCTGGTGGCCAACGCCGCGCGGCTGCGCCGCTGGTGCGTCGAGCAGGGCGTGCAG ATCGCCTACACCGCCCAGCCGGGCAGCATGACCGAGGAGCAGCGCGGCCTGCTCAAGGACTTCTGGGGGCCG GGCATGCGCGCCAGTCCGGCCGACCGCGAGGTGGTCGAGGAGCTGGCGCCGGGGCCGGACGACTGGCTGCTG ACCAAGTGGCGCTACAGCGCCTTCTTCCACTCCGACCTGCTCCAGCGGATGCGCGCCGCCGGCCGCGACCAG TTGGTGCTGTGCGGCGTATACGCCCACGTCGGGGTGCTGATCTCCACGGTCGACGCCTACTCCAACGACATC CAGCCGTTCCTGGTGGCCGACGCCATCGCCGACTTCAGCGAGGCGCACCACCGCATGGCCCTGGAATACGCC GCCAGCCGCTGCGCGATGGTGGTCACCACCGACGAGGTGCTGGAATGA