ViewGene

Locus Name:
GeneID:
Location:

GeneID:3704
TrivialName: PA14_13590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13590
PAO1 Ortholog Locus:PA3890
Sequence Length:663
Protein Length:220
Start: 1169455
Stop: 1168793
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07277.1|AE004806_4 (AE004806) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 220/220 (100%), Positives = 220/220 (100%)
Sequence:
ATGGACTTCTTCAGCGTGCTTTCCCATCTCGACTGGTCCCAGGTCGGCCAGCTCACCCTCCAGCACCTGCTG
CTGGTACTGGTCGCCGTAGGCCTGGCGATCCTCGTCGGCGTGCCGCTGGGCGTGCTGATGACCCGCTTCACG
TGGCTGGCCGGCCCGTTGCAGGGCGCCGCCACGGTGATGCTGACCATCCCCTCGATCGCCCTGTTCGGCCTG
CTGATGCCGGTCTACTCGGTATTCGGCCAGGGCCTCGGGCCGCTGCCGGCGATCACCGCGGTGTTCCTCTAT
TCGCTGCTGCCGATCCTGCGCAACACCTACCTTGCCCTGACCGGCGTCGAAGCAGGCATCCGCGAGGCCGGC
AAGGGCATCGGCATGACCTTCTGGCAACGCCTGCGGATGGTCGACATTCCCCTCGCGGTGCCGGTGATCCTC
GCCGGCGTACGCACCGCCGTGGTGATGAACATCGGCGTGATGACCATCGCCGCGGTGATCGGCGCCGGCGGC
CTGGGCGTGCTGATCCTCACTTCCATCAGCCAGAGCAACATGCCGATGCTGGTGGTCGGCGCGGTACTGGTC
AGCCTCCTGGCCATCGTCGCCGACCTGCTGCTGCAATGGCTGCAACGCATCCTCACCCCCAAGGGACTGCGC
GCCAGCGCGCACTGA
Translation:
MDFFSVLSHLDWSQVGQLTLQHLLLVLVAVGLAILVGVPLGVLMTRFTWLAGPLQGAATVMLTIPSIALFGL
LMPVYSVFGQGLGPLPAITAVFLYSLLPILRNTYLALTGVEAGIREAGKGIGMTFWQRLRMVDIPLAVPVIL
AGVRTAVVMNIGVMTIAAVIGAGGLGVLILTSISQSNMPMLVVGAVLVSLLAIVADLLLQWLQRILTPKGLR
ASAH*
AnnotationID:3712GeneID:3704
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 19:07:34
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC-type transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1174
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58022.1| (AE016872) glycine betaine/carnitine/choline ABC transporter,
           permease protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 217

 Score =  340 bits (871), Expect = 5e-93
 Identities = 176/215 (81%), Positives = 194/215 (90%)

>emb|CAD01821.1| (AL627270) putative ABC transporter membrane protein [Salmonella
           enterica subsp. enterica serovar Typhi]
          Length = 215

 Score =  270 bits (689), Expect = 6e-72
 Identities = 134/202 (66%), Positives = 168/202 (83%)

Structural Features:
COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, 
permease component 
[Amino acid transport and metabolism]
CD-Length = 221 residues,  90.5% aligned
Score =  190 bits (484), Expect = 2e-49
Identities = 118/205 (57%), Positives = 151/205 (73%), Gaps = 5/205 (2%)
Genomic Context:
Comment:
ReferenceID:7411
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24553
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31676
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3704_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3704

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5910 PA3890_tr translation of PA3890 220 99.99 99.99 0 1080.0
165523 gb|AAG07277.1|AE004806_4 (AE004806) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 220 99.99 99.99 0 1080.0
165524 gb|AAO58022.1| (AE016872) glycine betaine/carnitine/choline ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 220 80.00 88.18 3 868.0
165525 gb|AAN66494.1|AE016278_5 (AE016777) glycine betaine/carnitine/choline ABC transporter, permease protein, putative [Pseudomonas putida KT2440] 220 79.54 88.63 3 858.0
165526 gb|AAL20411.1| (AE008765) putative binding-protein-dependent transport system [Salmonella typhimurium LT2] 221 62.89 78.73 7 688.0
GC ORFID: 46706How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3890Glimmer Score:
Start: 3784483Stop: 3785145
Length: 663
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3890 translation of PA3890Homolog Bit Score 420.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5422 (ORF: BLASTX 340.0), t_PA3890 (ORF: GLIMMER)
GC ORF Sequence
ATGGACTTCTTCAGCGTGCTTTCCCATCTCGACTGGTCCCAGGTCGGCCAGCTCACCCTCCAGCACCTGCTG
CTGGTACTGGTCGCCGTAGGCCTGGCGATCCTCGTCGGCGTGCCGCTGGGCGTGCTGATGACCCGCTTCACG
TGGCTGGCCGGCCCGTTGCAGGGCGCCGCCACGGTGATGCTGACCATCCCCTCGATCGCCCTGTTCGGCCTG
CTGATGCCGGTCTACTCGGTATTCGGCCAGGGCCTCGGGCCGCTGCCGGCGATCACCGCGGTGTTCCTCTAT
TCGCTGCTGCCGATCCTGCGCAACACCTACCTTGCCCTGACCGGCGTCGAAGCAGGCATCCGCGAGGCCGGC
AAGGGCATCGGCATGACCTTCTGGCAACGCCTGCGGATGGTCGACATTCCCCTCGCGGTGCCGGTGATCCTC
GCCGGCGTACGCACCGCCGTGGTGATGAACATCGGCGTGATGACCATCGCCGCGGTGATCGGCGCCGGCGGC
CTGGGCGTGCTGATCCTCACTTCCATCAGCCAGAGCAACATGCCGATGCTGGTGGTCGGCGCGGTACTGGTC
AGCCTCCTGGCCATCGTCGCCGACCTGCTGCTGCAATGGCTGCAACGCATCCTCACCCCCAAGGGACTGCGC
GCCAGCGCGCACTGA