ViewGene
Locus Name:
GeneID:
Location:

GeneID:3703
TrivialName: PA14_17670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17670
PAO1 Ortholog Locus:PA3604
Sequence Length:654
Protein Length:217
Start: 1518968
Stop: 1519621
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06992.1|AE004780_11 (AE004780) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 217/217 (100%), Positives = 217/217 (100%)
Sequence:
ATGGCTTCTTACGAGATCCTGATCGCCGACGATCACCCCCTGTTTCGCAGCGCTTTGCACCAGGCCCTCACC
CTCGGGCTGGGTCCCGACGTGCGCCTGGTGGAAGCCGCCAGCATCGCCGAACTGGAAGCGCGGCTGAACGAG
AAGGCCGATTGGGATCTGGTCCTGCTGGACCTCAACATGCCGGGGGCCTATGGCTTCTCCGGCCTGGTGCTG
TTGCGCGGGCAATACCCGCAGGTGCCGGTGGTGATGATCTCGGCACAGGAGGAGGCCGCGGTGGTGCAGCGC
TCCCGCGAGTTCGGCGCCAGCGGCTTCATTCCCAAGTCCAGCCCGCTGGAAACCCTGCAGCAGGCGGTGCGC
GCGGTGCTCGACGGGGACACCTGGTGGCCGCCGCAGGATGCCGCCGCCGAAGCCCTCAGCGAGGAGGCCAAG
GCCGCCAGCGCCGGGCTCGCCAGCCTCACCCCGCAACAGTTCAGGGTACTCACCATGGTCTGCGAAGGGTTG
CTGAACAAGCAGATCGCCTACGACCTGAACGTTTCCGAGGCGACGGTGAAGGCCCACGTCACGGCGATCTTC
CGCAAGCTCAACGTGCGCACCCGGACCCAGGCCGCGCTGCTGCTGCAACAAATGGAGACGGTTCCCGCTTCT
CATTGA
Translation:
MASYEILIADDHPLFRSALHQALTLGLGPDVRLVEAASIAELEARLNEKADWDLVLLDLNMPGAYGFSGLVL
LRGQYPQVPVVMISAQEEAAVVQRSREFGASGFIPKSSPLETLQQAVRAVLDGDTWWPPQDAAAEALSEEAK
AASAGLASLTPQQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALLLQQMETVPAS
H*
AnnotationID:3711GeneID:3703
AnnotatorUID: diggins
Modification Date/Time: 2005-07-01 21:09:34
Gene Name:
Confidence Code:3
GeneProduct:putative DNA-binding response regulator, LuxR family
Cell Localization:()
Synonyms:PA3604
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2197,COG4566
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF64235.1|AF249735_3 (AF249735) putative response regulator [Pseudomonas putida]
          Length = 216

 Score =  352 bits (904), Expect = 7e-97
 Identities = 180/216 (83%), Positives = 195/216 (90%)

>gb|AAO57484.1| (AE016870) DNA-binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 215

 Score =  350 bits (899), Expect = 3e-96
 Identities = 176/214 (82%), Positives = 197/214 (92%)

>gb|AAM38323.1| (AE011996) transcriptional regulator luxR/uhpA family [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 212

 Score =  205 bits (522), Expect = 1e-52
 Identities = 111/211 (52%), Positives = 152/211 (72%), Gaps = 4/211 (1%)







 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain and 
an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  97.6% aligned
Score =  182 bits (463), Expect = 5e-47
Identities = 89/208 (42%), Positives = 124/208 (59%), Gaps = 3/208 (1%)

COG4566, TtrR, Response regulator [Signal transduction mechanisms]
CD-Length = 202 residues,  93.1% aligned
Score = 95.3 bits (237), Expect = 1e-20
Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 11/199 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7409




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24551




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31937




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3703_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3703
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5908
                           PA3604_tr
                           translation of PA3604
                           217
                           99.99
                           99.99
                           0
                           1080.0
     

     
     
165490
                           gb|AAG06992.1|AE004780_11
                           (AE004780) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           217
                           99.99
                           99.99
                           0
                           1080.0
     

     
     
165491
                           gb|AAF64235.1|AF249735_3
                           (AF249735) putative response regulator [Pseudomonas putida]
                           217
                           82.94
                           89.86
                           1
                           904.0
     

     
     
165493
                           gb|AAN67256.1|AE016352_9
                           (AE016780) DNA-binding response regulator [Pseudomonas putida KT2440]
                           217
                           82.48
                           89.86
                           1
                           899.0
     

     
     
165492
                           gb|AAO57484.1|
                           (AE016870) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           217
                           81.10
                           90.78
                           2
                           898.0
     

     






      

          
GC ORFID: 46705How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3604Glimmer Score: 

          
Start: 3434969Stop: 3434316

          
Length: 654


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3604 translation of PA3604Homolog Bit Score 420.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4663 (ORF: BLASTX 354.0), t_PA1978 (ORF: BLASTX 160.0), t_PA3604 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTTCTTACGAGATCCTGATCGCCGACGATCACCCCCTGTTTCGCAGCGCTTTGCACCAGGCCCTCACC 
CTCGGGCTGGGTCCCGACGTGCGCCTGGTGGAAGCCGCCAGCATCGCCGAACTGGAAGCGCGGCTGAACGAG 
AAGGCCGATTGGGATCTGGTCCTGCTGGACCTCAACATGCCGGGGGCCTATGGCTTCTCCGGCCTGGTGCTG 
TTGCGCGGGCAATACCCGCAGGTGCCGGTGGTGATGATCTCGGCACAGGAGGAGGCCGCGGTGGTGCAGCGC 
TCCCGCGAGTTCGGCGCCAGCGGCTTCATTCCCAAGTCCAGCCCGCTGGAAACCCTGCAGCAGGCGGTGCGC 
GCGGTGCTCGACGGGGACACCTGGTGGCCGCCGCAGGATGCCGCCGCCGAAGCCCTCAGCGAGGAGGCCAAG 
GCCGCCAGCGCCGGGCTCGCCAGCCTCACCCCGCAACAGTTCAGGGTACTCACCATGGTCTGCGAAGGGTTG 
CTGAACAAGCAGATCGCCTACGACCTGAACGTTTCCGAGGCGACGGTGAAGGCCCACGTCACGGCGATCTTC 
CGCAAGCTCAACGTGCGCACCCGGACCCAGGCCGCGCTGCTGCTGCAACAAATGGAGACGGTTCCCGCTTCT 
CATTGA