ViewGene
Locus Name:
GeneID:
Location:

GeneID:3702
TrivialName: PA14_30080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30080
PAO1 Ortholog Locus:PA2632
Sequence Length:621
Protein Length:206
Start: 2606186
Stop: 2605566
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06020.1|AE004691_11 (AE004691) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/206 (99%), Positives = 206/206 (100%)
Sequence:
ATGAGCGACACCCCGGAGACCTCGCCGGCCGACCTGCCGGCCATCGAATTCAGCTCTCCGGGGCGCTTTGCG
GTACGCAACCCGGCAAGCGCCGCACCACCCGCGGAACGCTGGGAACCAGCGCCATTCCGCCTCGGCGAACAT
GAGCCGCTGGAGCGCTTCGAGCATCCGCAGGAAGCCCGCGCCCATGCCCTGGCCCTCCTGCAGCAGGCCCGC
CGCTCGCTCTGCCTGCACAGTCCCGACCTGGAAAGCTGGCTCTATCACCACAGCAGCATCCAGGAAGCCTGC
ACCCGTTTTCTCCTGGCCAATCCACGCAATCGCCTGCGTATCCTCGTTGGCGACAGCGCCCAGGCCGTGCGC
AACGGCCACCGCCTGATCAACCTTTCGCGCCGCCTGTCGAGCAACTGCCTGATCCGCCGCCTCAACCCGGAC
TACCCTAAAGAGGACGACGCCTTCCTCCTGGCCGACGACCAGGGCCTGCTGCTGCGCCCGAAACCGGCGCAA
CCGGCGGGCTACGCCTGCTACCGTGCCGCCGGGCGGGTGCGTCAACTCCAGGCCCGCTTCGAGCAGGCCTGG
GACACCAGTCTTTCCGACCCGGACCTGCGGAGCTTCCTCCTGTGA
Translation:
MSDTPETSPADLPAIEFSSPGRFAVRNPASAAPPAERWEPAPFRLGEHEPLERFEHPQEARAHALALLQQAR
RSLCLHSPDLESWLYHHSSIQEACTRFLLANPRNRLRILVGDSAQAVRNGHRLINLSRRLSSNCLIRRLNPD
YPKEDDAFLLADDQGLLLRPKPAQPAGYACYRAAGRVRQLQARFEQAWDTSLSDPDLRSFLL*
AnnotationID:3710GeneID:3702
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2632
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7407




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24549




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3702
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5907
                           PA2632_tr
                           translation of PA2632
                           206
                           99.51
                           99.99
                           0
                           1079.0
     

     
     
165489
                           gb|AAG06020.1|AE004691_11
                           (AE004691) hypothetical protein PA2632 [Pseudomonas aeruginosa PAO1]
                           206
                           99.51
                           99.99
                           0
                           1079.0
     

     






      

          
GC ORFID: 46704How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2632Glimmer Score: 

          
Start: 2347740Stop: 2348360

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2632 translation of PA2632Homolog Bit Score 420.0

          
Other Homologs:  t_PA2632 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACACCCCGGAGACCTCGCCGGCCGACCTGCCGGCCATCGAATTCAGCTCTCCGGGGCGCTTTGCG 
GTACGCAACCCGGCAAGCGCCGCACCACCCGCGGAACGCTGGGAACCAGCGCCATTCCGCCTCGGCGAACAT 
GAGCCGCTGGAGCGCTTCGAGCATCCGCAGGAAGCCCGCGCCCATGCCCTGGCCCTCCTGCAGCAGGCCCGC 
CGCTCGCTCTGCCTGCACAGTCCCGACCTGGAAAGCTGGCTCTATCACCACAGCAGCATCCAGGAAGCCTGC 
ACCCGTTTTCTCCTGGCCAATCCACGCAATCGCCTGCGTATCCTCGTTGGCGACAGCGCCCAGGCCGTGCGC 
AACGGCCACCGCCTGATCAACCTTTCGCGCCGCCTGTCGAGCAACTGCCTGATCCGCCGCCTCAACCCGGAC 
TACCCTAAAGAGGACGACGCCTTCCTCCTGGCCGACGACCAGGGCCTGCTGCTGCGCCCGAAACCGGCGCAA 
CCGGCGGGCTACGCCTGCTACCGTGCCGCCGGGCGGGTGCGTCAACTCCAGGCCCGCTTCGAGCAGGCCTGG 
GACACCAGTCTTTCCGACCCGGACCTGCGGAGCTTCCTCCTGTGA