ViewGene
Locus Name:
GeneID:
Location:

GeneID:3701
TrivialName: PA14_46710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46710
PAO1 Ortholog Locus:PA1359
Sequence Length:651
Protein Length:216
Start: 4162977
Stop: 4163627
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04748.1|AE004565_7 (AE004565) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 214/218 (98%), Positives = 216/218 (99%), Gaps = 2/218 (0%)
Sequence:
ATGGAAGAGGTCCGGCAGTGGGAAGCAGCCCGATGGACTGCGGGAAACGGGATGTGCACTATAATGCGCAAA
ACCGCGACAGTGAGCAATATATTGCCCAGCCCTACCGAACGCCCCAGCGTCCTCGAACATGTCTCCGGCAAC
GTCCGCCGCCTGCGCCTGCAAGCCGGCCTCAGCCAGGAAGCGCTGGCCCGCGCGGCCAGTGTCAGCCGGCGG
ATGCTGGTGGGCATCGAGAGCGGCGACGTCAATGTCAGCCTGTCGACCCTCGACCGTATCGCCGCCGCCCTC
GGCGTGCTGTTCCCCGACCTGGTCCAGGCCCCGGCCACCGACCGCTCGCGGATCAATGCGGTGGCCTGGGTC
GGCCACCACCCCGAGAGCCGCGCCACCCTCCTCGCCAGCGCACCGGCGCGGCGCGAGGTGGAACTCTGGGCC
TGGTCGCTGGGACCGGGCGAGCGCTACGTATCGGAACCCGACGCCGCCGGCTGGCGGGAGATGGTTCTGGTC
ATCGAAGGTCGCCTGCGCCTGGAACTGGCCGACGGCGAACGGCGCATCGAGGCCGGCGACTTCCATGCCTTC
GCCAGCGACCAGCCGTACGCCTACGTCAACGATGGGGACGAGGTGGTGCGTTTCACCCGCAACGTGGTGAGC
TAG
Translation:
MEEVRQWEAARWTAGNGMCTIMRKTATVSNILPSPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRR
MLVGIESGDVNVSLSTLDRIAAALGVLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWA
WSLGPGERYVSEPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRNVVS
*
AnnotationID:3709GeneID:3701
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 10:10:57
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1359
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093,smart00530,pfam01381
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67845.1|AE016415_10 (AE016782) transcriptional regulator, Cro/CI family [Pseudomonas
           putida KT2440]
          Length = 177

 Score =  198 bits (504), Expect = 2e-50
 Identities = 104/175 (59%), Positives = 124/175 (70%), Gaps = 1/175 (0%)

>gb|AAO56944.1| (AE016868) DNA-binding protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 189

 Score =  191 bits (485), Expect = 3e-48
 Identities = 104/181 (57%), Positives = 125/181 (69%), Gaps = 3/181 (1%)








 
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
CD-Length = 58 residues,  96.6% aligned
Score = 56.3 bits (136), Expect = 3e-09
Identities = 25/56 (44%), Positives = 35/56 (62%)

smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
CD-Length = 56 residues,  91.1% aligned
Score = 54.4 bits (131), Expect = 1e-08
Identities = 24/51 (47%), Positives = 31/51 (60%)

pfam01381, HTH_3, Helix-turn-helix.
CD-Length = 55 residues,  90.9% aligned
Score = 53.2 bits (128), Expect = 2e-08
Identities = 24/50 (48%), Positives = 31/50 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24547




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37406




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3701_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3701
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5906
                           PA1359_tr
                           translation of PA1359
                           218
                           98.16
                           99.08
                           2
                           1082.0
     

     
     
165486
                           gb|AAG04748.1|AE004565_7
                           (AE004565) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           218
                           98.16
                           99.08
                           2
                           1082.0
     

     
     
165487
                           gb|AAN67845.1|AE016415_10
                           (AE016782) transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440]
                           217
                           47.92
                           57.14
                           41
                           504.0
     

     
     
165488
                           gb|AAO56944.1|
                           (AE016868) DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           219
                           47.48
                           57.99
                           33
                           482.0
     

     






      

          
GC ORFID: 46703How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1359Glimmer Score: 

          
Start: 790932Stop: 790282

          
Length: 651


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1359 translation of PA1359Homolog Bit Score 420.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene186 (ORF: BLASTX 192.0), t_PA1359 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAGAGGTCCGGCAGTGGGAAGCAGCCCGATGGACTGCGGGAAACGGGATGTGCACTATAATGCGCAAA 
ACCGCGACAGTGAGCAATATATTGCCCAGCCCTACCGAACGCCCCAGCGTCCTCGAACATGTCTCCGGCAAC 
GTCCGCCGCCTGCGCCTGCAAGCCGGCCTCAGCCAGGAAGCGCTGGCCCGCGCGGCCAGTGTCAGCCGGCGG 
ATGCTGGTGGGCATCGAGAGCGGCGACGTCAATGTCAGCCTGTCGACCCTCGACCGTATCGCCGCCGCCCTC 
GGCGTGCTGTTCCCCGACCTGGTCCAGGCCCCGGCCACCGACCGCTCGCGGATCAATGCGGTGGCCTGGGTC 
GGCCACCACCCCGAGAGCCGCGCCACCCTCCTCGCCAGCGCACCGGCGCGGCGCGAGGTGGAACTCTGGGCC 
TGGTCGCTGGGACCGGGCGAGCGCTACGTATCGGAACCCGACGCCGCCGGCTGGCGGGAGATGGTTCTGGTC 
ATCGAAGGTCGCCTGCGCCTGGAACTGGCCGACGGCGAACGGCGCATCGAGGCCGGCGACTTCCATGCCTTC 
GCCAGCGACCAGCCGTACGCCTACGTCAACGATGGGGACGAGGTGGTGCGTTTCACCCGCAACGTGGTGAGC 
TAG