ViewGene

Locus Name:
GeneID:
Location:

GeneID:3700
TrivialName: PA14_04020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04020
PAO1 Ortholog Locus:PA0307
Sequence Length:612
Protein Length:203
Start: 363196
Stop: 362585
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03696.1|AE004469_1 (AE004469) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/203 (99%), Positives = 202/203 (99%)
Sequence:
ATGGCAAGCTTGGCACCCGTTTTCCGTGTGAATGCCATGACTCCCCGCCGCAAGACGCTCCTCGTCAGCCTG
GTCGGCCTGCTCTGGGCCGGCGGCCTGCTCGCCGCCTACTGGTGGTTCGAGATCCGCTACATCCGCCCGTTC
AGCGAGCAGACCACCCTGTTCTCCGGCGACAGCCTGCGCCTGCCGGCCGAGCTGGCCGGGCCGGGGGCGATC
CGCCTGGTGCATTTCTGGGACCCGGCCTGCCCCTGCAACGTCGGCAACCAGCAGCACCTCGGCGAGCTGATC
GAACGCTTCGCCGGCAAGGGCGTGGAGTTCCATGTCCTGCAGAAGCCTGGCAGCCAGGGCCGCCTGCCGGAC
AACCTGGCCGCCCTGCGCCCCCTCGCCGGTCTGCCCGGTTCCGAGCAGTTGCCGGCCAGCCCGGCCGTGGCG
ATCTGGGACCGCGACGGCCGCCTGGCCTACTTCGGCCCCTATAGCGAGGGCGCGGTATGCACCTCCAGCAAC
AGCTTCATCGAACCGATCCTCGAAGCGCTGCTGCAGGGACGTCCGGTGGATGCCACCCATACCCTCGCCGTG
GGTTGCTACTGCCCCTGGACCCCGGAAAAAGGCTGA
Translation:
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAI
RLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVA
IWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG*
AnnotationID:3708GeneID:3700
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 07:07:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0307
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7403
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24545
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3700

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5905 PA0307_tr translation of PA0307 203 99.50 99.50 0 1081.0
165484 gb|AAG03696.1|AE004469_1 (AE004469) hypothetical protein PA0307 [Pseudomonas aeruginosa PAO1] 203 99.50 99.50 0 1081.0
165485 gb|AAN70727.1|AE016716_6 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 209 62.20 71.77 26 682.0
GC ORFID: 46702How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0307Glimmer Score:
Start: 6164538Stop: 6163927
Length: 612
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0307 translation of PA0307Homolog Bit Score 421.0
Other Homologs: t_PA0307 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAAGCTTGGCACCCGTTTTCCGTGTGAATGCCATGACTCCCCGCCGCAAGACGCTCCTCGTCAGCCTG
GTCGGCCTGCTCTGGGCCGGCGGCCTGCTCGCCGCCTACTGGTGGTTCGAGATCCGCTACATCCGCCCGTTC
AGCGAGCAGACCACCCTGTTCTCCGGCGACAGCCTGCGCCTGCCGGCCGAGCTGGCCGGGCCGGGGGCGATC
CGCCTGGTGCATTTCTGGGACCCGGCCTGCCCCTGCAACGTCGGCAACCAGCAGCACCTCGGCGAGCTGATC
GAACGCTTCGCCGGCAAGGGCGTGGAGTTCCATGTCCTGCAGAAGCCTGGCAGCCAGGGCCGCCTGCCGGAC
AACCTGGCCGCCCTGCGCCCCCTCGCCGGTCTGCCCGGTTCCGAGCAGTTGCCGGCCAGCCCGGCCGTGGCG
ATCTGGGACCGCGACGGCCGCCTGGCCTACTTCGGCCCCTATAGCGAGGGCGCGGTATGCACCTCCAGCAAC
AGCTTCATCGAACCGATCCTCGAAGCGCTGCTGCAGGGACGTCCGGTGGATGCCACCCATACCCTCGCCGTG
GGTTGCTACTGCCCCTGGACCCCGGAAAAAGGCTGA