ViewGene
Locus Name:
GeneID:
Location:

GeneID:37
TrivialName: PA14_12820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12820
PAO1 Ortholog Locus:PA3946
Sequence Length:3639
Protein Length:1212
Start: 1098155
Stop: 1101793
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07333.1|AE004812_8 (AE004812) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 1202/1212 (99%), Positives = 1207/1212 (99%)
Sequence:
ATGCGATCAAAACTATTCCTGCTGTTCTTCTGCCTGCTGCTGTCGGGCGGACGCCTGTTCGCCATCGAAGCG
CATCCGTCCCTGACGCTGTTCAGCCAGTTGCGCATCGAGCACGAGGACATGGCGATCGCCGAGGACGACTGG
GCCTGGCTGCGCCACAAGGGTCACCTGAGGCTCGGCGCGGCGCTGGACGAGACCTCGCCCTTCAACGTCCGG
CTCGACGACGAGAACTACGAAGGCATAACGGCGGACGTCGCCACGCTGGTCGGACAGTTGCTCGGCATGCGC
ATCAAGGTCGTGAGCTTCGATACCCATGCGGATGCCGTGGCGGCGCTCGCTGCCGGAAAGATCGACCTGCTT
GGCAGCCATTACAGCTCGGCGGGCGATTCTTCCCTGGTGCTCAGCCAACCCTACGCCCGTGACCGATTGGCG
GTGTTCAAGCGGATGGGGGAAAAGCGCAACTCGCCGGAGGATCTCGCCGGACTCAGCGTGGCGGTGGCCCGG
GAGCATGTCGGGGAATTGCGCCAGCGTTTCCCGCGGGCGCGTTTCGTGGTCTTCGGCAGCCATGACGAGGCC
GTTGCCGCGGTGGCTTTCGGACATACCGACCTGTATCTCGACGATGTGCTCAGCGCCTACCACCGGATCAAT
CGATCCTATTACGGCTACGTGAGGTTCGAGCGGTTTGCCGATGCCCGCCTGGAAGGGGGCTACGGCTTCCTC
CTTCGTCGCGGCGATACGAACCTGTTGCGCGTCGTCAACTCGGCCATCGGCGCGATCAACCAGGACCGTCTC
GAAAGCATCGCCAGGCGCTGGGTCGGCAGCGGCTCCCTGCCAACGGGCCAGCGTATCGCGCTGACGCCGCAG
GAGAGCCGCTGGATCGCTCGCCACCCGGTGGTGCGGTTGGTCATCAACGACGACCTGGCGCCGCTGGCCTTC
TTCAATTCCGACGAGACCTTCTCGGGCATCGCCTCCGACCTGCTGGACATGATTTCCCGCCGCACCGGCCTG
CATTTCCAGGTCACGCCTCGCAGTGGCGGCTTCCCCGAGCAGATCGGCGTATTGGCCAGGAAGGAGGCGGAC
CTGGCGATCATGAGCCGCAGCAGCAAGCGCGAGGAAATGCTGCGTTTCACCCGCTCGTTCCTGTCCACCTCG
TACGTCCTCGTCACCCGGGCGGACGACAAGGGACGCGCGGAGAGCCCCGGAAGCCTCGACGGCAAGCGCATA
GCGATTCCCGCCGGCCATGTGGGCATGCAACAGGTGCGCGAGCGCTATCCGCAGGCCTCGATAGTGGAGGTC
GGCGTCGCGCTGGATGCCATGAACCTGGTCTACGAAGGACGGGCCGACGCGGCGGTGGTGCCGCTGGTCACC
GCTCGCTACTACATCGTCCGGTTGTTCCGCGAGAGGCTGGCGATCGCCGACCTGGTTCCCATCGGTGCGGCC
ACCGCCCACTTCGCCGTTCGCCGAGGCGACGCCGAACTCCAGTCGATTCTCGACAAGGCCTTGCTGAGCATC
TCGCCGGACGACCTGAGCGATATCGTCAATCGCTGGCGCTCGCCGCCGGGAATGAGCGGCCAGACCTGGGTC
GACTACATCCTGGTGATCACCGAGATCCTGGCGATCGCAGCGGCCTTGCTGCTGTTCTGCCTGGGCTGGGTC
ACTTATCAGCGCCGGCAGATCAGGGCGCGCGCGCGGGTCGAACAGGCGCTCAGCGACCAGTTGCGGTTCGTC
GAGGCCCTGACCGACTGCATGCCCCCGCCGCTGTATGTGCGCGATGTCAACGGACGGATGCTGTCCTGCAAC
CGCAGCTACTTGCAGAGCGTCGGCCTGAGTTCCGAGGAGGTGATGAACCGCACCGTGCTCGAGCTGCCCATG
GAAAACTTCGAGACCGCTCCGGAGTTCCATCGCAGCTACCTGATGGCCATGCGCGAGGGCAGGACCATCGAG
GCGGTCTACCCGGTGGCGCTGGGCGGCCGGGAGCGCTGGATCGACCACTGGATCCAGCCGTTCCGCGATTCC
AGCGGGACCATCCGCGGTGTCATCTGTGGCTGGCTGGACATCACCGAGCACCGCCAGTTGATCGACGAACTG
GAAGAAGCGAAGAACCTGGCCGACGAAGCGAGCCGGGCCAAGACCACCTTCCTGGCGACCATGAGCCACGAG
ATACGCACGCCGATGAATGCGGTGATCGGCATCCTCGAACTGGCGCTCAAGCGTGCCGAGACCGGTCGGGTG
GACCGCTCCAGCATCGAGATCGCCTATGCCTCGGCGAAGAGCCTGCTGGAGCTGATCGGCGATATTCTCGAC
ATCGCCCGCATCGAGTCCGGTCGCCTCAGCCTGTCGCCGAAACGGGCCAACCTGCGCGAGCTGGTGGAATCG
GTGGCACGGGTGTTCGAAGGCCTGGCCCGGCAAAAGCGCCTGAGCCTGGTGCTGGAGATCGATTCGAGTATC
AACGGCGACGTACTGCTGGATGCCATGCGCTTCAAGCAGATCCTCTCCAACCTGGTCAGCAACGCGATCAAG
TTCACCGACGAGGGATCGATCCGCATCCGCATCGATGGCCGCCAGGTGGAGCCGTCGCTGTTGCAGGTCAAT
CTCTGTGTGGAAGACACCGGCATCGGTATTTCCCTGGGCGACCAGCAGCAATTGTTCCGGCCTTTCGCCCAG
GTCAACCGCAACCTGCAGAACACCGAGGGCACCGGGCTCGGCCTGGTGATCTCGCGCTCGCTGTGCGAAATG
ATGGGAGGGCGTCTGGTGATGAGCAGCGAGCTGGGGCAGGGTACGCGGATCGACGTCGAGCTGCGCCTGCAG
GTGCTGGAACCGATCGTCGAGAACGTGCGGGCGATCCCGCTCGGCAGTCGCCAGGCGCGGCGGTTGCAGGTG
CTGGTGGTGGACGACCATGCGGTCAACCGGCAGATCCTCCATCAACAACTGAGCTTCCTCGGTCATGACGTG
GAGGAAGCGGAGAACGGCCTGAACGCTCTCAACCTCTGGCATGGGCAACCGTTCGACATGGTCATCACCGAC
TGCCACATGCCGCTGATGAGCGGCTCCGACCTCGCCCGCTCGATCCGCCAGGAGGAGCGCGAGAATGGCGAG
GAACCGGTGGTCATCATCGGCCTCACCGCGGACGCCCAGCCGGAGGAGATCGAGCGTTGCATCCAGGCTGGA
ATGAACGAATGCCTGATCAAGCCCATCGGTCTCGATGTTCTCGAGGAGCGTCTTCTGGCCCTGGGCTTCGCC
GACGACGACCTGCCCGTCACCATCGACGCCGAACCCGTCGCCATACCGTCGGACCCCCGTCTCTACGACCTG
GATTCCCTGCATGCGCTGACCGGCGGCGAGCCGACGATGCTCAGGCGGCTGCTCGATGAACTGCTGACCAGC
AACCGCAAGGACCTGGAGACCCTCGAGGGACTGGTGCAACGCCAGGAGACCGGCGAACTGGCCGAGCTGGCG
CATCGGATCAAGGGCGCGGCGAGGGTGGTGCGTGGCGAGCAACTGGTGGAAAGCTGCCGGCGCCTCGAGGAT
GCCTGCCTCAGCCCGAACGCCTCGTTCGCCTGGGTGGAGGAGTGCGCCGTTGGGGTGAAACTGGCGATCCTC
GCCCTGGACGAGAGCCTGGTGGAAGAGTGCACGGATTGA
Translation:
MRSKLFLLFFCLLLSGGRLFAIEAHPSLTLFSQLRIEHEDMAIAEDDWAWLRHKGHLRLGAALDETSPFNVR
LDDENYEGITADVATLVGQLLGMRIKVVSFDTHADAVAALAAGKIDLLGSHYSSAGDSSLVLSQPYARDRLA
VFKRMGEKRNSPEDLAGLSVAVAREHVGELRQRFPRARFVVFGSHDEAVAAVAFGHTDLYLDDVLSAYHRIN
RSYYGYVRFERFADARLEGGYGFLLRRGDTNLLRVVNSAIGAINQDRLESIARRWVGSGSLPTGQRIALTPQ
ESRWIARHPVVRLVINDDLAPLAFFNSDETFSGIASDLLDMISRRTGLHFQVTPRSGGFPEQIGVLARKEAD
LAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKGRAESPGSLDGKRIAIPAGHVGMQQVRERYPQASIVEV
GVALDAMNLVYEGRADAAVVPLVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSI
SPDDLSDIVNRWRSPPGMSGQTWVDYILVITEILAIAAALLLFCLGWVTYQRRQIRARARVEQALSDQLRFV
EALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIE
AVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTFLATMSHE
IRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVES
VARVFEGLARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVN
LCVEDTGIGISLGDQQQLFRPFAQVNRNLQNTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRIDVELRLQ
VLEPIVENVRAIPLGSRQARRLQVLVVDDHAVNRQILHQQLSFLGHDVEEAENGLNALNLWHGQPFDMVITD
CHMPLMSGSDLARSIRQEERENGEEPVVIIGLTADAQPEEIERCIQAGMNECLIKPIGLDVLEERLLALGFA
DDDLPVTIDAEPVAIPSDPRLYDLDSLHALTGGEPTMLRRLLDELLTSNRKDLETLEGLVQRQETGELAELA
HRIKGAARVVRGEQLVESCRRLEDACLSPNASFAWVEECAVGVKLAILALDESLVEECTD*
AnnotationID:47GeneID:37
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 12:12:38
Gene Name:
Confidence Code:3
GeneProduct:probable two-component sensor
Cell Localization:()
Synonyms:PA3946
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642, KOG0519, COG2205, smart00062
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|10512 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
Length = 336
Score =  149 bits (375), Expect = 4e-36
Identities = 98/331 (29%), Positives = 162/331 (48%), Gaps = 17/331 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:77




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:37
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
73
                           PA3946_tr
                           translation of PA3946
                           1212
                           99.17
                           99.58
                           0
                           6062.0
     

     
     
11343
                           gb|AAG07333.1|AE004812_8
                           (AE004812) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           1212
                           99.17
                           99.58
                           0
                           6062.0
     

     
     
11344
                           emb|CAE33487.1|
                           (BX640446) virulence sensor protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           1267
                           40.33
                           56.59
                           84
                           2141.0
     

     
     
11345
                           emb|CAE38319.1|
                           (BX640432) virulence sensor protein [Bordetella parapertussis]
                           1267
                           40.17
                           56.66
                           84
                           2136.0
     

     
     
11346
                           emb|CAA37124.1|
                           (X52948) bvgS product, put. sensor protein [Bordetella parapertussis]
                           1267
                           40.09
                           56.51
                           84
                           2128.0
     

     






      

          
GC ORFID: 43039How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3946Glimmer Score: 

          
Start: 3855783Stop: 3852145

          
Length: 3639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3946 translation of PA3946Homolog Bit Score 2339.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene353 (ORF: BLASTX 907.0), t_PA3044 (ORF: BLASTX 551.0), t_PA3946 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGATCAAAACTATTCCTGCTGTTCTTCTGCCTGCTGCTGTCGGGCGGACGCCTGTTCGCCATCGAAGCG 
CATCCGTCCCTGACGCTGTTCAGCCAGTTGCGCATCGAGCACGAGGACATGGCGATCGCCGAGGACGACTGG 
GCCTGGCTGCGCCACAAGGGTCACCTGAGGCTCGGCGCGGCGCTGGACGAGACCTCGCCCTTCAACGTCCGG 
CTCGACGACGAGAACTACGAAGGCATAACGGCGGACGTCGCCACGCTGGTCGGACAGTTGCTCGGCATGCGC 
ATCAAGGTCGTGAGCTTCGATACCCATGCGGATGCCGTGGCGGCGCTCGCTGCCGGAAAGATCGACCTGCTT 
GGCAGCCATTACAGCTCGGCGGGCGATTCTTCCCTGGTGCTCAGCCAACCCTACGCCCGTGACCGATTGGCG 
GTGTTCAAGCGGATGGGGGAAAAGCGCAACTCGCCGGAGGATCTCGCCGGACTCAGCGTGGCGGTGGCCCGG 
GAGCATGTCGGGGAATTGCGCCAGCGTTTCCCGCGGGCGCGTTTCGTGGTCTTCGGCAGCCATGACGAGGCC 
GTTGCCGCGGTGGCTTTCGGACATACCGACCTGTATCTCGACGATGTGCTCAGCGCCTACCACCGGATCAAT 
CGATCCTATTACGGCTACGTGAGGTTCGAGCGGTTTGCCGATGCCCGCCTGGAAGGGGGCTACGGCTTCCTC 
CTTCGTCGCGGCGATACGAACCTGTTGCGCGTCGTCAACTCGGCCATCGGCGCGATCAACCAGGACCGTCTC 
GAAAGCATCGCCAGGCGCTGGGTCGGCAGCGGCTCCCTGCCAACGGGCCAGCGTATCGCGCTGACGCCGCAG 
GAGAGCCGCTGGATCGCTCGCCACCCGGTGGTGCGGTTGGTCATCAACGACGACCTGGCGCCGCTGGCCTTC 
TTCAATTCCGACGAGACCTTCTCGGGCATCGCCTCCGACCTGCTGGACATGATTTCCCGCCGCACCGGCCTG 
CATTTCCAGGTCACGCCTCGCAGTGGCGGCTTCCCCGAGCAGATCGGCGTATTGGCCAGGAAGGAGGCGGAC 
CTGGCGATCATGAGCCGCAGCAGCAAGCGCGAGGAAATGCTGCGTTTCACCCGCTCGTTCCTGTCCACCTCG 
TACGTCCTCGTCACCCGGGCGGACGACAAGGGACGCGCGGAGAGCCCCGGAAGCCTCGACGGCAAGCGCATA 
GCGATTCCCGCCGGCCATGTGGGCATGCAACAGGTGCGCGAGCGCTATCCGCAGGCCTCGATAGTGGAGGTC 
GGCGTCGCGCTGGATGCCATGAACCTGGTCTACGAAGGACGGGCCGACGCGGCGGTGGTGCCGCTGGTCACC 
GCTCGCTACTACATCGTCCGGTTGTTCCGCGAGAGGCTGGCGATCGCCGACCTGGTTCCCATCGGTGCGGCC 
ACCGCCCACTTCGCCGTTCGCCGAGGCGACGCCGAACTCCAGTCGATTCTCGACAAGGCCTTGCTGAGCATC 
TCGCCGGACGACCTGAGCGATATCGTCAATCGCTGGCGCTCGCCGCCGGGAATGAGCGGCCAGACCTGGGTC 
GACTACATCCTGGTGATCACCGAGATCCTGGCGATCGCAGCGGCCTTGCTGCTGTTCTGCCTGGGCTGGGTC 
ACTTATCAGCGCCGGCAGATCAGGGCGCGCGCGCGGGTCGAACAGGCGCTCAGCGACCAGTTGCGGTTCGTC 
GAGGCCCTGACCGACTGCATGCCCCCGCCGCTGTATGTGCGCGATGTCAACGGACGGATGCTGTCCTGCAAC 
CGCAGCTACTTGCAGAGCGTCGGCCTGAGTTCCGAGGAGGTGATGAACCGCACCGTGCTCGAGCTGCCCATG 
GAAAACTTCGAGACCGCTCCGGAGTTCCATCGCAGCTACCTGATGGCCATGCGCGAGGGCAGGACCATCGAG 
GCGGTCTACCCGGTGGCGCTGGGCGGCCGGGAGCGCTGGATCGACCACTGGATCCAGCCGTTCCGCGATTCC 
AGCGGGACCATCCGCGGTGTCATCTGTGGCTGGCTGGACATCACCGAGCACCGCCAGTTGATCGACGAACTG 
GAAGAAGCGAAGAACCTGGCCGACGAAGCGAGCCGGGCCAAGACCACCTTCCTGGCGACCATGAGCCACGAG 
ATACGCACGCCGATGAATGCGGTGATCGGCATCCTCGAACTGGCGCTCAAGCGTGCCGAGACCGGTCGGGTG 
GACCGCTCCAGCATCGAGATCGCCTATGCCTCGGCGAAGAGCCTGCTGGAGCTGATCGGCGATATTCTCGAC 
ATCGCCCGCATCGAGTCCGGTCGCCTCAGCCTGTCGCCGAAACGGGCCAACCTGCGCGAGCTGGTGGAATCG 
GTGGCACGGGTGTTCGAAGGCCTGGCCCGGCAAAAGCGCCTGAGCCTGGTGCTGGAGATCGATTCGAGTATC 
AACGGCGACGTACTGCTGGATGCCATGCGCTTCAAGCAGATCCTCTCCAACCTGGTCAGCAACGCGATCAAG 
TTCACCGACGAGGGATCGATCCGCATCCGCATCGATGGCCGCCAGGTGGAGCCGTCGCTGTTGCAGGTCAAT 
CTCTGTGTGGAAGACACCGGCATCGGTATTTCCCTGGGCGACCAGCAGCAATTGTTCCGGCCTTTCGCCCAG 
GTCAACCGCAACCTGCAGAACACCGAGGGCACCGGGCTCGGCCTGGTGATCTCGCGCTCGCTGTGCGAAATG 
ATGGGAGGGCGTCTGGTGATGAGCAGCGAGCTGGGGCAGGGTACGCGGATCGACGTCGAGCTGCGCCTGCAG 
GTGCTGGAACCGATCGTCGAGAACGTGCGGGCGATCCCGCTCGGCAGTCGCCAGGCGCGGCGGTTGCAGGTG 
CTGGTGGTGGACGACCATGCGGTCAACCGGCAGATCCTCCATCAACAACTGAGCTTCCTCGGTCATGACGTG 
GAGGAAGCGGAGAACGGCCTGAACGCTCTCAACCTCTGGCATGGGCAACCGTTCGACATGGTCATCACCGAC 
TGCCACATGCCGCTGATGAGCGGCTCCGACCTCGCCCGCTCGATCCGCCAGGAGGAGCGCGAGAATGGCGAG 
GAACCGGTGGTCATCATCGGCCTCACCGCGGACGCCCAGCCGGAGGAGATCGAGCGTTGCATCCAGGCTGGA 
ATGAACGAATGCCTGATCAAGCCCATCGGTCTCGATGTTCTCGAGGAGCGTCTTCTGGCCCTGGGCTTCGCC 
GACGACGACCTGCCCGTCACCATCGACGCCGAACCCGTCGCCATACCGTCGGACCCCCGTCTCTACGACCTG 
GATTCCCTGCATGCGCTGACCGGCGGCGAGCCGACGATGCTCAGGCGGCTGCTCGATGAACTGCTGACCAGC 
AACCGCAAGGACCTGGAGACCCTCGAGGGACTGGTGCAACGCCAGGAGACCGGCGAACTGGCCGAGCTGGCG 
CATCGGATCAAGGGCGCGGCGAGGGTGGTGCGTGGCGAGCAACTGGTGGAAAGCTGCCGGCGCCTCGAGGAT 
GCCTGCCTCAGCCCGAACGCCTCGTTCGCCTGGGTGGAGGAGTGCGCCGTTGGGGTGAAACTGGCGATCCTC 
GCCCTGGACGAGAGCCTGGTGGAAGAGTGCACGGATTGA