ViewGene

Locus Name:
GeneID:
Location:

GeneID:3698
TrivialName: PA14_61740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61740
PAO1 Ortholog Locus:PA4668
Sequence Length:618
Protein Length:205
Start: 5508717
Stop: 5509334
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08055.1|AE004880_11 (AE004880) probable lipoprotein localization protein LolB [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
ATGCGTCTACGTCTTTTCCTCGCCGCCTCCGCGCTGGCCCTGCTCAGCGGCTGCGCCGGCCTGACCTCCCAC
GAAGCCCTGGAAGGCCAGGGCGATGCGCAGACCTGGAAAACCCACAAGCAGCAACTCAGCGAGCTGGATGCC
TGGCAGATCGACGGCAAGGTCGGCATCCGCGCCCCGCGCGACTCCGGCAGCGGCACCCTGTTCTGGCTGCAG
CGCCAGGGCTACTACGACATCCGCCTGTCCGGCCCGCTCGGCCGCGGCGCAGCACGCCTGACCGGGCGTGAA
GGCGCGGTGAGCCTGGAAGTCGCCGGGCAGGGCCGCTACCAGGCGGAGTCCCCGGAAGCCCTGCTGGAAGAA
CAACTAGGCTGGCGCCTGCCGGTCTCGCACCTGCTCTGGTGGGTACGCGGCCTCCCGGCGCCGGACAGCAAG
AGCCGCCTGACCCTCGACGCCGACAGTCGCCTGGCGCGCTTGGAACAGGACGGCTGGCAGATCGAATACACC
CGCTACGCCGAACAGAACGGCTACTGGCTACCCGAGCGCCTGAAGCTGCACGGCCAGGACCTCGACGTCACC
CTGGTGATCAAGGACTGGCAGCCGCGCCAGCTCGGCCGCTGA
Translation:
MRLRLFLAASALALLSGCAGLTSHEALEGQGDAQTWKTHKQQLSELDAWQIDGKVGIRAPRDSGSGTLFWLQ
RQGYYDIRLSGPLGRGAARLTGREGAVSLEVAGQGRYQAESPEALLEEQLGWRLPVSHLLWWVRGLPAPDSK
SRLTLDADSRLARLEQDGWQIEYTRYAEQNGYWLPERLKLHGQDLDVTLVIKDWQPRQLGR*
AnnotationID:3706GeneID:3698
AnnotatorUID: diggins
Modification Date/Time: 2005-05-20 12:12:00
Gene Name:lolB
Confidence Code:2
GeneProduct:putative lipoprotein localization protein LolB
Cell Localization:(6) Outer membrane protein
Synonyms:hemB
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03550
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54635.1| (AE016859) outer membrane lipoprotein LolB [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 205

 Score =  343 bits (881), Expect = 3e-94
 Identities = 160/205 (78%), Positives = 181/205 (88%)

>gb|AAN66349.1|AE016263_6 (AE016776) outer membrane lipoprotein LolB [Pseudomonas putida
           KT2440]
          Length = 205

 Score =  341 bits (875), Expect = 1e-93
 Identities = 160/204 (78%), Positives = 177/204 (86%)
Structural Features:
pfam03550, LolB, Outer membrane lipoprotein LolB.
CD-Length = 189 residues, 100.0% aligned
Score =  193 bits (491), Expect = 1e-50
Identities = 69/189 (36%), Positives = 88/189 (46%), Gaps = 3/189 (1%)
Genomic Context:
Comment:
ReferenceID:7399
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24541
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36553
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3698_cdd.html
URL:
ReferenceID:38151
Author/Investigator(s): Matsuyama S, Yokota N, Tokuda H.
Title: A novel outer membrane lipoprotein, LolB (HemM), involved in the LolA (p20)-dependent localization of lipoproteins to the outer membrane of Escherichia coli.
PubMed: 9384574
MedLine:
Source:
EMBO J. 1997 Dec 1;16(23):6947-55.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9384574&query_hl=7
ReferenceID:38152
Author/Investigator(s): Ikemi M, Murakami K, Hashimoto M, Murooka Y.
Title: Cloning and characterization of genes involved in the biosynthesis of delta-aminolevulinic acid in Escherichia coli.
PubMed: 1427085
MedLine:
Source:
Gene. 1992 Nov 2;121(1):127-32.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1427085&query_hl=7
Homologs By Global Alignment
Gene ID:3698

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5903 PA4668_tr translation of PA4668 205 99.99 99.99 0 1083.0
165476 gb|AAG08055.1|AE004880_11 (AE004880) probable lipoprotein localization protein LolB [Pseudomonas aeruginosa PAO1] 205 99.99 99.99 0 1083.0
165477 emb|CAA57571.1| (X82071) hypothetical protein [Pseudomonas aeruginosa] 205 97.07 97.56 0 1052.0
165478 gb|AAO54635.1| (AE016859) outer membrane lipoprotein LolB [Pseudomonas syringae pv. tomato str. DC3000] 205 78.04 88.29 0 881.0
165479 gb|AAN66349.1|AE016263_6 (AE016776) outer membrane lipoprotein LolB [Pseudomonas putida KT2440] 205 78.04 86.34 0 875.0
GC ORFID: 46700How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4668Glimmer Score:
Start: 4772397Stop: 4773014
Length: 618
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4668 translation of PA4668Homolog Bit Score 421.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5093 (ORF: BLASTX 344.0), t_PA4668 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTCTACGTCTTTTCCTCGCCGCCTCCGCGCTGGCCCTGCTCAGCGGCTGCGCCGGCCTGACCTCCCAC
GAAGCCCTGGAAGGCCAGGGCGATGCGCAGACCTGGAAAACCCACAAGCAGCAACTCAGCGAGCTGGATGCC
TGGCAGATCGACGGCAAGGTCGGCATCCGCGCCCCGCGCGACTCCGGCAGCGGCACCCTGTTCTGGCTGCAG
CGCCAGGGCTACTACGACATCCGCCTGTCCGGCCCGCTCGGCCGCGGCGCAGCACGCCTGACCGGGCGTGAA
GGCGCGGTGAGCCTGGAAGTCGCCGGGCAGGGCCGCTACCAGGCGGAGTCCCCGGAAGCCCTGCTGGAAGAA
CAACTAGGCTGGCGCCTGCCGGTCTCGCACCTGCTCTGGTGGGTACGCGGCCTCCCGGCGCCGGACAGCAAG
AGCCGCCTGACCCTCGACGCCGACAGTCGCCTGGCGCGCTTGGAACAGGACGGCTGGCAGATCGAATACACC
CGCTACGCCGAACAGAACGGCTACTGGCTACCCGAGCGCCTGAAGCTGCACGGCCAGGACCTCGACGTCACC
CTGGTGATCAAGGACTGGCAGCCGCGCCAGCTCGGCCGCTGA