ViewGene
Locus Name:
GeneID:
Location:

GeneID:3697
TrivialName: PA14_57680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57680
PAO1 Ortholog Locus:PA4440
Sequence Length:630
Protein Length:209
Start: 5137620
Stop: 5136991
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07828.1|AE004858_6 (AE004858) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 207/209 (99%), Positives = 209/209 (100%)
Sequence:
TTGTCTACCCGCGAAATCCCTGTATCCATCGATGGCCCCTGCGGGCCGCTGGAAGCCCTGCACCTCGATCTG
CCCGATGCCCGCGGCATCGCCCTGGTCTGCCATCCGCACCCGCTGTTCGCCGGCACCATGCAGAACAAGGTG
GTCGCCACTCTGCAACGCAGCGCCCGCGATGCCGGCCTGGCGACCCTGCGTTTCAACTTCCGTGGCGTTGGC
CAGAGCGCTGGCAGCTATGGCGAGGGGATCGGCGAAATCGACGACGCCGAGGCCGCTGCGCGCTGGTTGCTG
GCACGCCATCCGGGGCTGCCGCTGACACTGATGGGCTTTTCCTTCGGCTCCTGCGTCGCCGGCAATCTGGCG
GGTCGCCTGGAGGCGGAGGGCGTCGGGCTGGCGCGGCTGTTCATGATCGCGCCGCCGGTGGAGCGCTTCGCG
GTCAGCCTGCCTGCGCGCTGCCCGCTGACCGTGGTGCAGCCGGAGGACGACGACGTGGTCACGCCGGCCGCG
GTATATGCCTGGAGCGAGTCCCTGGCACGACCGCACGAGCTGTTGCGGGTGGCAGAAAGCGGACATTTCTTC
CATGGCAAGCTGATCGATCTGAAGGACCTGTTGCTGCCACGCCTGCAGGACTGA
Translation:
MSTREIPVSIDGPCGPLEALHLDLPDARGIALVCHPHPLFAGTMQNKVVATLQRSARDAGLATLRFNFRGVG
QSAGSYGEGIGEIDDAEAAARWLLARHPGLPLTLMGFSFGSCVAGNLAGRLEAEGVGLARLFMIAPPVERFA
VSLPARCPLTVVQPEDDDVVTPAAVYAWSESLARPHELLRVAESGHFFHGKLIDLKDLLLPRLQD*
AnnotationID:3705GeneID:3697
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 21:09:19
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA4440
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2945
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2945, Predicted hydrolase of the alpha/beta superfamily 
CD-Length = 210 residues,  98.1% aligned
Score =  234 bits (598), Expect = 1e-62
Identities = 95/210 (45%), Positives = 118/210 (56%), Gaps = 6/210 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14899




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24539




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31479




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3697_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3697
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5902
                           PA4440_tr
                           translation of PA4440
                           209
                           99.04
                           99.99
                           0
                           1081.0
     

     
     
165467
                           gb|AAG07828.1|AE004858_6
                           (AE004858) hypothetical protein PA4440 [Pseudomonas aeruginosa PAO1]
                           209
                           98.56
                           99.99
                           0
                           1079.0
     

     
     
165468
                           gb|AAN66934.1|AE016322_1
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           211
                           68.24
                           78.19
                           2
                           739.0
     

     
     
165469
                           gb|AAO57879.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           211
                           64.92
                           75.82
                           4
                           706.0
     

     
     
165472
                           emb|CAD13856.1|
                           (AL646058) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           227
                           40.08
                           51.54
                           30
                           342.0
     

     






      

          
GC ORFID: 46699How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4440Glimmer Score: 

          
Start: 4401299Stop: 4400670

          
Length: 630


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4440 translation of PA4440Homolog Bit Score 421.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2026 (ORF: BLASTX 278.0), t_PA4440 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGTCTACCCGCGAAATCCCTGTATCCATCGATGGCCCCTGCGGGCCGCTGGAAGCCCTGCACCTCGATCTG 
CCCGATGCCCGCGGCATCGCCCTGGTCTGCCATCCGCACCCGCTGTTCGCCGGCACCATGCAGAACAAGGTG 
GTCGCCACTCTGCAACGCAGCGCCCGCGATGCCGGCCTGGCGACCCTGCGTTTCAACTTCCGTGGCGTTGGC 
CAGAGCGCTGGCAGCTATGGCGAGGGGATCGGCGAAATCGACGACGCCGAGGCCGCTGCGCGCTGGTTGCTG 
GCACGCCATCCGGGGCTGCCGCTGACACTGATGGGCTTTTCCTTCGGCTCCTGCGTCGCCGGCAATCTGGCG 
GGTCGCCTGGAGGCGGAGGGCGTCGGGCTGGCGCGGCTGTTCATGATCGCGCCGCCGGTGGAGCGCTTCGCG 
GTCAGCCTGCCTGCGCGCTGCCCGCTGACCGTGGTGCAGCCGGAGGACGACGACGTGGTCACGCCGGCCGCG 
GTATATGCCTGGAGCGAGTCCCTGGCACGACCGCACGAGCTGTTGCGGGTGGCAGAAAGCGGACATTTCTTC 
CATGGCAAGCTGATCGATCTGAAGGACCTGTTGCTGCCACGCCTGCAGGACTGA