ViewGene

Locus Name:
GeneID:
Location:

GeneID:3696
TrivialName: PA14_08850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08850
PAO1 Ortholog Locus:PA4263
Sequence Length:636
Protein Length:211
Start: 759559
Stop: 760194
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07651.1|AE004841_29 (AE004841) 50S ribosomal protein L3 [Pseudomonas aeruginosa PAO1]
Identities = 211/211 (100%), Positives = 211/211 (100%)
Sequence:
ATGACAATTGGTGTTGTCGGTCGTAAATGCGGCATGACCCGCATTTTCACCGAGGAAGGTGTCTCTATTCCG
GTTACGGTCATCGAGGTCGAGCCGAATCGCGTCACCCAGTTCAAGACTGAAGAAACCGATGGCTACCGTGCA
GTGCAAGTCACCGCCGGCGAGCGTCGTGCTTCTCGCGTTACCAAAGCGCAAGCTGGTCACTTTGCCAAGGCG
AATGTCGCCGCCGGTCGCGGCGTGTGGGAATTCCGTCTGGGCGAAGAGCAGTATGCCGCTGGTGACCAGATC
ACTGTCGATCTGTTCCAGGCAGGCCAGATGGTAGACGTTACCGGCGAGTCCAAGGGTAAGGGCTTCGCGGGC
ACCATCAAGCGCTGGAACTTCCGTGGTCAGGATAACACCCACGGTAACTCCGTTTCCCACCGCGTCCCGGGT
TCCATCGGCCAGTGCCAGACTCCTGGTCGAGTGTTCAAGGGCAAGAAAATGTCCGGTCATCTGGGTGCGGAG
CGGGTAACCGTTCAATCCCTGGAGATCGTGCGCGTCGATGCTGAACGCAATCTGCTGCTGGTCAAGGGTGCC
GTTCCCGGCGCTACCGGCGGTGATGTGATCGTGCGTCCGGCAGCCAAGGCTCGCGGTTAA
Translation:
MTIGVVGRKCGMTRIFTEEGVSIPVTVIEVEPNRVTQFKTEETDGYRAVQVTAGERRASRVTKAQAGHFAKA
NVAAGRGVWEFRLGEEQYAAGDQITVDLFQAGQMVDVTGESKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPG
SIGQCQTPGRVFKGKKMSGHLGAERVTVQSLEIVRVDAERNLLLVKGAVPGATGGDVIVRPAAKARG*
AnnotationID:3704GeneID:3696
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 16:04:22
Gene Name:rplC
Confidence Code:2
GeneProduct:50S ribosomal protein L3
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00297
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66084.1|AE016238_2 (AE016775) ribosomal protein L3 [Pseudomonas putida KT2440]
          Length = 222

 Score =  389 bits (1000), Expect = e-108
 Identities = 190/211 (90%), Positives = 200/211 (94%)

>gb|AAO54168.1| (AE016858) ribosomal protein L3 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 211

 Score =  384 bits (985), Expect = e-106
 Identities = 189/211 (89%), Positives = 200/211 (94%)

>gb|AAO09270.1|AE016799_168 (AE016799) Ribosomal protein L3 [Vibrio vulnificus CMCP6]
          Length = 209

 Score =  325 bits (834), Expect = 8e-89
 Identities = 158/208 (75%), Positives = 182/208 (87%), Gaps = 1/208 (0%)
Structural Features:
pfam00297, Ribosomal_L3, Ribosomal protein L3.
CD-Length = 200 residues, 100.0% aligned
Score =  203 bits (519), Expect = 1e-53
Identities = 97/201 (48%), Positives = 121/201 (60%), Gaps = 7/201 (3%)
Genomic Context:
Comment:
ReferenceID:7395
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24537
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36634
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3696_cdd.html
URL:
ReferenceID:36741
Author/Investigator(s): Zurawski G, Zurawski SM.
Title: Structure of the Escherichia coli S10 ribosomal protein operon.
PubMed: 3892488
MedLine:
Source:
Nucleic Acids Res. 1985 Jun 25;13(12):4521-6.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3892488
Homologs By Global Alignment
Gene ID:3696

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5901 PA4263_tr translation of PA4263 211 99.99 99.99 0 1083.0
165321 gb|AAG07651.1|AE004841_29 (AE004841) 50S ribosomal protein L3 [Pseudomonas aeruginosa PAO1] 211 99.99 99.99 0 1083.0
165323 gb|AAO54168.1| (AE016858) ribosomal protein L3 [Pseudomonas syringae pv. tomato str. DC3000] 211 89.57 94.78 0 985.0
165322 gb|AAN66084.1|AE016238_2 (AE016775) ribosomal protein L3 [Pseudomonas putida KT2440] 222 85.58 90.09 11 1000.0
165324 gb|AAO09270.1|AE016799_168 (AE016799) Ribosomal protein L3 [Vibrio vulnificus CMCP6] 213 75.11 85.91 6 835.0
GC ORFID: 46698How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4263Glimmer Score:
Start: 4194380Stop: 4193745
Length: 636
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4263 translation of PA4263Homolog Bit Score 421.0
Other Homologs: t_PA4263 (ORF: GLIMMER)
GC ORF Sequence
ATGACAATTGGTGTTGTCGGTCGTAAATGCGGCATGACCCGCATTTTCACCGAGGAAGGTGTCTCTATTCCG
GTTACGGTCATCGAGGTCGAGCCGAATCGCGTCACCCAGTTCAAGACTGAAGAAACCGATGGCTACCGTGCA
GTGCAAGTCACCGCCGGCGAGCGTCGTGCTTCTCGCGTTACCAAAGCGCAAGCTGGTCACTTTGCCAAGGCG
AATGTCGCCGCCGGTCGCGGCGTGTGGGAATTCCGTCTGGGCGAAGAGCAGTATGCCGCTGGTGACCAGATC
ACTGTCGATCTGTTCCAGGCAGGCCAGATGGTAGACGTTACCGGCGAGTCCAAGGGTAAGGGCTTCGCGGGC
ACCATCAAGCGCTGGAACTTCCGTGGTCAGGATAACACCCACGGTAACTCCGTTTCCCACCGCGTCCCGGGT
TCCATCGGCCAGTGCCAGACTCCTGGTCGAGTGTTCAAGGGCAAGAAAATGTCCGGTCATCTGGGTGCGGAG
CGGGTAACCGTTCAATCCCTGGAGATCGTGCGCGTCGATGCTGAACGCAATCTGCTGCTGGTCAAGGGTGCC
GTTCCCGGCGCTACCGGCGGTGATGTGATCGTGCGTCCGGCAGCCAAGGCTCGCGGTTAA