ViewGene
Locus Name:
GeneID:
Location:

GeneID:3695
TrivialName: PA14_21250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21250
PAO1 Ortholog Locus:PA3306
Sequence Length:603
Protein Length:200
Start: 1840731
Stop: 1841333
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06694.1|AE004753_2 (AE004753) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/200 (99%), Positives = 200/200 (100%)
Sequence:
ATGGACCTGTTCGCCGACGCACCCCTGACCCTGCCGGACGCCGACCTGCGCTATCTCCCGCATTGGCTGGAT
GCGCCGCTGGCGAGCGCCTGGCTGTTGCGCCTGGAACAGGAAACGCCCTGGGAACAGCCGATCCTGCGCATC
CATGGCGAGGAGCACCCGACCCCGCGCCTGGTGGCCTGGTACGGTGACCCGGAAGCCGCCTACCGTTATTCC
GGCCAGGTCCACCGGCCGCTGCCATGGACCGCGTTGCTCGGCGAGATCCGCGAGCGCGTGGAGCGCGAGATC
GGCCAGCGGGTCAACGGCGTGCTGCTGAACTACTACCGCGACGGCCAGGACTCCATGGGCTGGCACAGCGAC
GACGAGCCAGAGCTGCGCCGCGATCCGCTGGTCGCCTCGCTCAGTCTCGGCGGCAGCCGCCGCTTCGACCTG
CGGCGCAAGGGCCAGACCCGCATCGCCCATTCCCTGGAACTGACCCATGGCAGCCTGCTGGTCATGCGCGGC
GCAACCCAGCATCATTGGCAACATCAGGTGGCGAAGACCCGCCGCTCCTGCATGCCCCGTTTGAACCTGACC
TTCCGCCTGGTGTATCCCCAGCCATGA
Translation:
MDLFADAPLTLPDADLRYLPHWLDAPLASAWLLRLEQETPWEQPILRIHGEEHPTPRLVAWYGDPEAAYRYS
GQVHRPLPWTALLGEIRERVEREIGQRVNGVLLNYYRDGQDSMGWHSDDEPELRRDPLVASLSLGGSRRFDL
RRKGQTRIAHSLELTHGSLLVMRGATQHHWQHQVAKTRRSCMPRLNLTFRLVYPQP*
AnnotationID:3703GeneID:3695
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:54
Gene Name:alkB
Confidence Code:3
GeneProduct:putative alkylated DNA repair protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3145
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM38417.1| (AE012007) DNA repair system specific for alkylated DNA
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 203

 Score =  179 bits (454), Expect = 9e-45
 Identities = 87/190 (45%), Positives = 117/190 (61%)

>gb|AAO08501.1|AE016813_253 (AE016813) Alkylated DNA repair protein [Vibrio vulnificus CMCP6]
          Length = 203

 Score =  176 bits (445), Expect = 1e-43
 Identities = 92/193 (47%), Positives = 124/193 (64%), Gaps = 5/193 (2%)

>gb|AAM39947.1| (AE012161) DNA repair system specific for alkylated DNA
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
          Length = 201

 Score =  168 bits (426), Expect = 2e-41
 Identities = 82/188 (43%), Positives = 113/188 (60%)








 
Structural Features:
COG3145, AlkB, Alkylated DNA repair protein 
[DNA replication, recombination, and repair]
CD-Length = 194 residues,  99.5% aligned
Score =  150 bits (381), Expect = 9e-38
Identities = 69/196 (35%), Positives = 90/196 (45%), Gaps = 8/196 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7393




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24535




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32246




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3695_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3695
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5900
                           PA3306_tr
                           translation of PA3306
                           200
                           99.00
                           99.99
                           0
                           1082.0
     

     
     
165308
                           gb|AAG06694.1|AE004753_2
                           (AE004753) hypothetical protein PA3306 [Pseudomonas aeruginosa PAO1]
                           200
                           99.00
                           99.99
                           0
                           1082.0
     

     
     
165309
                           dbj|BAC96481.1|
                           (AP005346) alkylated DNA repair protein [Vibrio vulnificus YJ016]
                           207
                           46.85
                           61.35
                           11
                           461.0
     

     
     
165311
                           gb|AAO08501.1|AE016813_253
                           (AE016813) Alkylated DNA repair protein [Vibrio vulnificus CMCP6]
                           208
                           45.67
                           61.53
                           13
                           449.0
     

     
     
165314
                           gb|AAF84108.1|AE003963_5
                           (AE003963) DNA repair system specific for alkylated DNA [Xylella fastidiosa 9a5c]
                           206
                           44.66
                           56.31
                           12
                           424.0
     

     






      

          
GC ORFID: 46697How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3306Glimmer Score: 

          
Start: 3113200Stop: 3112598

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3306 translation of PA3306Homolog Bit Score 421.0

          
Other Homologs:  t_PA3306 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCTGTTCGCCGACGCACCCCTGACCCTGCCGGACGCCGACCTGCGCTATCTCCCGCATTGGCTGGAT 
GCGCCGCTGGCGAGCGCCTGGCTGTTGCGCCTGGAACAGGAAACGCCCTGGGAACAGCCGATCCTGCGCATC 
CATGGCGAGGAGCACCCGACCCCGCGCCTGGTGGCCTGGTACGGTGACCCGGAAGCCGCCTACCGTTATTCC 
GGCCAGGTCCACCGGCCGCTGCCATGGACCGCGTTGCTCGGCGAGATCCGCGAGCGCGTGGAGCGCGAGATC 
GGCCAGCGGGTCAACGGCGTGCTGCTGAACTACTACCGCGACGGCCAGGACTCCATGGGCTGGCACAGCGAC 
GACGAGCCAGAGCTGCGCCGCGATCCGCTGGTCGCCTCGCTCAGTCTCGGCGGCAGCCGCCGCTTCGACCTG 
CGGCGCAAGGGCCAGACCCGCATCGCCCATTCCCTGGAACTGACCCATGGCAGCCTGCTGGTCATGCGCGGC 
GCAACCCAGCATCATTGGCAACATCAGGTGGCGAAGACCCGCCGCTCCTGCATGCCCCGTTTGAACCTGACC 
TTCCGCCTGGTGTATCCCCAGCCATGA