ViewGene

Locus Name:
GeneID:
Location:

GeneID:3694
TrivialName: PA14_22490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22490
PAO1 Ortholog Locus:PA3223
Sequence Length:642
Protein Length:213
Start: 1957217
Stop: 1957858
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06611.1|AE004745_8 (AE004745) acyl carrier protein phosphodiesterase [Pseudomonas aeruginosa PAO1]
Identities = 209/213 (98%), Positives = 211/213 (99%)
Sequence:
ATGTCCCGTGTCCTGGTTATCGAGAGCAGTGCCCGCCAACGGGGCTCGGTTTCCCGCCTGCTGACGGCGGAA
TTCATCTCCCACTGGAAAGCCGCGCATCCCGCTGATCGCTTCCAGGTCCGCGACCTGGCGCGCGAGCCGCTG
CCGCACCTCGATGAATTATTGCTGGGAGCCTGGACCACTCCCTGCGATGGCCATAGCGCTGCGGAAAGGCGC
GCCCTCGAGCGTTCCAATCGCCTGACCGAGGAGTTGCGGATAGCGGACGTGCTGGTGCTGGCGGCGCCGATG
TACAACTTCGCCATTCCCAGCAGCCTGAAGAGCTGGTTCGACCATGTGCTGCGCGCCGGCCTGACCTTCCGT
TACGCCGAGCAGGGGCCGGAAGGCCTGCTACAGGGCAAGCGCGCCTTCGTTCTCACCGCCCGCGGCGGAATC
TACGCCGGCGGCGGTCTCGACCACCAGGAACCCTATCTGCGCCAGGTGCTGGGCTTCGTCGGCATCCACGAC
GTCACCTTCATCCACGCGGAGGGCATGAACATGGGCCCGGAGTTCCGTGAGAAAGGCCTGGCGCGAGCCCGC
GAGCGGATGCTGCAGGCGCTGGAAACGAACACTTCCCTTTGCGTCCCTCTGCCAACGCTCCGGTGA
Translation:
MSRVLVIESSARQRGSVSRLLTAEFISHWKAAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERR
ALERSNRLTEELRIADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGI
YAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMLQALETNTSLCVPLPTLR*
AnnotationID:3702GeneID:3694
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:58
Gene Name:acpD
Confidence Code:2
GeneProduct:acyl carrier protein phosphodiesterase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1182,pfam02525
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70111.1|AE016651_1 (AE016791) acyl carrier protein phosphodiesterase, putative
           [Pseudomonas putida KT2440]
          Length = 199

 Score =  271 bits (692), Expect = 3e-72
 Identities = 132/195 (67%), Positives = 155/195 (79%)

>gb|AAM85576.1|AE013803_11 (AE013803) acyl carrier protein phosphodiesterase [Yersinia pestis
           KIM]
          Length = 201

 Score =  181 bits (459), Expect = 3e-45
 Identities = 96/199 (48%), Positives = 128/199 (64%)

>gb|AAN80302.1|AE016760_161 (AE016760) Acyl carrier protein phosphodiesterase [Escherichia coli
           CFT073]
          Length = 201

 Score =  171 bits (433), Expect = 3e-42
 Identities = 92/192 (47%), Positives = 122/192 (63%)
Structural Features:
COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]
CD-Length = 202 residues,  99.5% aligned
Score =  274 bits (701), Expect = 9e-75
Identities = 107/201 (53%), Positives = 137/201 (68%), Gaps = 3/201 (1%)

pfam02525, Flavodoxin_2, Flavodoxin-like fold. 
CD-Length = 196 residues, 100.0% aligned
Score =  147 bits (373), Expect = 8e-37
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Genomic Context:
Comment:
ReferenceID:7391
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24533
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32317
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3694_cdd.html
URL:
ReferenceID:33979
Author/Investigator(s): Nakanishi M, Yatome C, Ishida N, Kitade Y.
Title: Putative ACP phosphodiesterase gene (acpD) encodes an azoreductase.
PubMed: 11583992
MedLine:
Source:
J Biol Chem. 2001 Dec 7;276(49):46394-9. Epub 2001 Oct 02.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11583992
Homologs By Global Alignment
Gene ID:3694

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5898 PA3223_tr translation of PA3223 213 98.12 99.06 0 1081.0
165271 gb|AAG06611.1|AE004745_8 (AE004745) acyl carrier protein phosphodiesterase [Pseudomonas aeruginosa PAO1] 213 98.12 99.06 0 1081.0
165272 gb|AAN70111.1|AE016651_1 (AE016791) acyl carrier protein phosphodiesterase, putative [Pseudomonas putida KT2440] 213 61.97 72.76 14 689.0
165288 gb|AAO10716.1|AE016804_226 (AE016804) Acyl carrier protein phosphodiesterase [Vibrio vulnificus CMCP6] 214 45.79 61.68 20 434.0
165278 emb|CAD01689.1| (AL627270) acyl carrier protein phosphodiesterase [Salmonella enterica subsp. enterica serovar Typhi] 217 45.16 59.44 20 432.0
GC ORFID: 46696How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3223Glimmer Score:
Start: 2996714Stop: 2996073
Length: 642
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3223 translation of PA3223Homolog Bit Score 421.0
Other Homologs: t_PA1962 (ORF: BLASTX 140.0), t_PA3223 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCGTGTCCTGGTTATCGAGAGCAGTGCCCGCCAACGGGGCTCGGTTTCCCGCCTGCTGACGGCGGAA
TTCATCTCCCACTGGAAAGCCGCGCATCCCGCTGATCGCTTCCAGGTCCGCGACCTGGCGCGCGAGCCGCTG
CCGCACCTCGATGAATTATTGCTGGGAGCCTGGACCACTCCCTGCGATGGCCATAGCGCTGCGGAAAGGCGC
GCCCTCGAGCGTTCCAATCGCCTGACCGAGGAGTTGCGGATAGCGGACGTGCTGGTGCTGGCGGCGCCGATG
TACAACTTCGCCATTCCCAGCAGCCTGAAGAGCTGGTTCGACCATGTGCTGCGCGCCGGCCTGACCTTCCGT
TACGCCGAGCAGGGGCCGGAAGGCCTGCTACAGGGCAAGCGCGCCTTCGTTCTCACCGCCCGCGGCGGAATC
TACGCCGGCGGCGGTCTCGACCACCAGGAACCCTATCTGCGCCAGGTGCTGGGCTTCGTCGGCATCCACGAC
GTCACCTTCATCCACGCGGAGGGCATGAACATGGGCCCGGAGTTCCGTGAGAAAGGCCTGGCGCGAGCCCGC
GAGCGGATGCTGCAGGCGCTGGAAACGAACACTTCCCTTTGCGTCCCTCTGCCAACGCTCCGGTGA