ViewGene
Locus Name:
GeneID:
Location:

GeneID:3690
TrivialName: PA14_44320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44320
PAO1 Ortholog Locus:PA1558
Sequence Length:633
Protein Length:210
Start: 3947057
Stop: 3946425
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04947.1|AE004584_3 (AE004584) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/210 (99%), Positives = 209/210 (99%)
Sequence:
TTGTCGCTGAAATGGAACCGCCCGGCCGGCTCGCTGTCGGCCACCCTGATTCTCGCCCATGGCGCCGGGGCG
CCGATGGACAGCCCGTTCATGGAGCGCATCGCCGAACTGCTCGCCGCCCAGGGCATCGCCGTCGCGCGCTTC
GAGTTTCCCTACATGGCCCAGCGCCGCGAGGACGGCCGCAAGCGTCCGCCGAATCCGCAGGCGCAGTTGCTC
GACTGCTGGCGGCGGGTCCATGCGCAGGTCCGCGAGACCCTGGACGGGCCCTTGGCCCTGGGCGGCAAGTCG
ATGGGCGGGCGCATGGCCAGCCTGCTGGCCGACGAGCTGGGCGCGGATGCCCTGGTCTGCCTCGGCTACCCG
TTCTACGCCGCCGGCAAGCCGGAGAAGCCGCGAGTCGCCCACCTCGCCGGGCTGCGCACGCCGACCCTGATC
GTCCAGGGCGAGCGCGACGCCCTGGGCAACCGCGAGGCGGTGGCGGACTATGCGCTGGCGCCGACGATCCGC
CTGCACTGGCTGGCCGCGGCGGACCACGACCTCAAGCCGCTGAAGGCCTCCGGCCTGACCCACGAGCAGCAC
CTGGCGGCAACGGCGCGGGAGGTGGCCGGCTTCCTTCGCGGGCTCCAGGGCCATTAA
Translation:
MSLKWNRPAGSLSATLILAHGAGAPMDSPFMERIAELLAAQGIAVARFEFPYMAQRREDGRKRPPNPQAQLL
DCWRRVHAQVRETLDGPLALGGKSMGGRMASLLADELGADALVCLGYPFYAAGKPEKPRVAHLAGLRTPTLI
VQGERDALGNREAVADYALAPTIRLHWLAAADHDLKPLKASGLTHEQHLAATAREVAGFLRGLQGH*
AnnotationID:3698GeneID:3690
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 12:12:52
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1558
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3571
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE20560.1| (BX572096) Esterase/lipase/thioesterase family active site
           [Prochlorococcus marinus]
          Length = 219

 Score =  177 bits (450), Expect = 3e-44
 Identities = 94/198 (47%), Positives = 124/198 (62%), Gaps = 6/198 (3%)






 
Structural Features:
COG3571, COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold
CD-Length = 213 residues,  98.6% aligned
Score =  269 bits (690), Expect = 1e-73
Identities = 115/211 (54%), Positives = 136/211 (64%), Gaps = 5/211 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14895




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24525




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37309




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3690_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3690
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5893
                           PA1558_tr
                           translation of PA1558
                           210
                           99.52
                           99.52
                           0
                           1082.0
     

     
     
165069
                           gb|AAG04947.1|AE004584_3
                           (AE004584) hypothetical protein PA1558 [Pseudomonas aeruginosa PAO1]
                           210
                           99.04
                           99.52
                           0
                           1080.0
     

     
     
165070
                           gb|AAN69829.1|AE016622_6
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           234
                           63.67
                           69.65
                           28
                           748.0
     

     
     
165077
                           emb|CAC49795.1|
                           (AL603646) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           219
                           46.57
                           57.07
                           15
                           423.0
     

     
     
165071
                           gb|AAO55523.1|
                           (AE016862) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           334
                           44.31
                           49.70
                           128
                           734.0
     

     






      

          
GC ORFID: 46692How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1558Glimmer Score: 

          
Start: 1006852Stop: 1007484

          
Length: 633


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1558 translation of PA1558Homolog Bit Score 421.0

          
Other Homologs:  t_PA1558 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGTCGCTGAAATGGAACCGCCCGGCCGGCTCGCTGTCGGCCACCCTGATTCTCGCCCATGGCGCCGGGGCG 
CCGATGGACAGCCCGTTCATGGAGCGCATCGCCGAACTGCTCGCCGCCCAGGGCATCGCCGTCGCGCGCTTC 
GAGTTTCCCTACATGGCCCAGCGCCGCGAGGACGGCCGCAAGCGTCCGCCGAATCCGCAGGCGCAGTTGCTC 
GACTGCTGGCGGCGGGTCCATGCGCAGGTCCGCGAGACCCTGGACGGGCCCTTGGCCCTGGGCGGCAAGTCG 
ATGGGCGGGCGCATGGCCAGCCTGCTGGCCGACGAGCTGGGCGCGGATGCCCTGGTCTGCCTCGGCTACCCG 
TTCTACGCCGCCGGCAAGCCGGAGAAGCCGCGAGTCGCCCACCTCGCCGGGCTGCGCACGCCGACCCTGATC 
GTCCAGGGCGAGCGCGACGCCCTGGGCAACCGCGAGGCGGTGGCGGACTATGCGCTGGCGCCGACGATCCGC 
CTGCACTGGCTGGCCGCGGCGGACCACGACCTCAAGCCGCTGAAGGCCTCCGGCCTGACCCACGAGCAGCAC 
CTGGCGGCAACGGCGCGGGAGGTGGCCGGCTTCCTTCGCGGGCTCCAGGGCCATTAA