ViewGene
Locus Name:
GeneID:
Location:

GeneID:369
TrivialName: PA14_21280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21280
PAO1 Ortholog Locus:PA3305
Sequence Length:1995
Protein Length:664
Start: 1842061
Stop: 1844055
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06693.1|AE004753_1 (AE004753) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 659/664 (99%), Positives = 663/664 (99%)
Sequence:
GTGCCCATTCACTGGAAGCCGTTCCTGGCACCCTCGACGCTGGCGCTCAAGTTCGCCATCAAGACGCTCCTG
GCCGGCGGCCTGGCGTTGTGGTGCGCCTTTCGCTTCGACCTGGAGCAGCCGCAATGGGCGCTGATGACCGTG
CTGATCGTGTCCCAGCCGTTGTCCGGCATGGTGGTGGCGAAGGGCTTGTTCCGCCTGCTCGGCACCCTGGTC
GGCACCGCGATGTCGGTGCTGATGATCGCGCTGTTCGCCCAGGCGCCCTGGTTGTTCCTGCTGGCCATCTCG
CTCTGGCTGGGGCTCTGCACGGCGGCCTCGACCTCCCTGCGCAACCACGTTTCCTATGCCTTCGTACTTTCC
GGCTATACCGTGGCGATCATTGGCCTGCCAGCGGTGGACCAGCCGCTGCTGGTCTTCGAGCAGGCGGTGGCG
CGTTGTACCGAGATCTGCCTGGGGATCATCTGCGCCTCGGCGGTCAGTGCGATCCTCTGGCCGCAGCGGGTC
GAGCAGAACCTCGACAAGCAGGCCCACGCCACCTGGCTGCTGGGCATGCAGGCCGCGCGCGGCGAGATCGAC
CCGCGCCAGCGGCAGCCGCAGGGGCTGCTCAACGCGCTGAGCAAGATCGTCGAGGTCGATGCGCAGCGCGAC
CATGCCTGGTTCGAGGGCGAGCGCGGGCGGCGCCGGGCCGGCGCCCTGGCGTTGCTCTCGCGCGACCTGCTC
AGCCTGTTGCGCACCGCGCGCGGCGTGGCCCGGCAACGGGCGCGGCTGAGCGACGAGGATGAGCGCCAGGTG
GAGCGCTGGCTGGCCGCGCTGGCCAGCGCCCTGGAAGGAACCGATCCGGCGTCGATGCAGGCGCTGCGCGAG
GAGTTGGCGCAGGTCGCGGTCGAGCCGCAGTGGAGCAACGACCAGCGTTACCTGCTGACCCGCTGCTCGGTG
CTGCTGCTCAAGGCGGTGAATGCCGAGAAGGGCATGCGCGCGGTGGCCAGCGGCGAGGTCGAGGGGCGGGTG
GGCAGCGCCGGCACCCTGTCCTGGCACCGCGACCTGCAGATGGCGCTGTTCTACGGCGCGCGTAGCGCCCTG
GCGTTGCTCGGGCTGTCGGTCTACTGGATCTATACCGCGTGGCCGGCGGCGTCCGGCGCGATGCTGCTGGCG
GCGGTGGTGTGCAGCCTGTTCGCCAACCGCGACAACGCGGTGGCCATCGGCCTGAGCTTCCTGCGCGGCATC
GTCTACGCGATCCCGGCGGCGATGCTGGTCAGCCAGTGGCTGCTGCCGCAGTGGAATGGCTTCCCGCTGCTC
TGCCTGGCGATGGGCGTGCCGCTGTTCTTCGCCACCCTGGGCATGGCCGTACCGGTCACCGCCGGCACCGCC
ACCTCGTTCGCGATCCACTTCATCGTCCTGGTCGCGCCGCGCAACCAGATGGACTACGACCTCGCGACCCTG
CTGAATTCCGCCCAGGGCGTGCTGATCGGAGTCGGCTTCGCGGTGGTGATCTTCCGCTTGCTGACCTTGCGT
CCGGGCTGGCTGACCCGACGCCTGCTGGACGCCACCTGCGTCGACCTCGGCCGCCTCACCCGGCGCCCGCTG
GCGCAGGCGGAGAACTGGTTCGGCGGGCGCATGGCCGACCGCCTGTTGCGCCTGGCGCGGCACGCCAACCTG
TTGCCGGAGCAGGAGCGGCGGCGTTGGGACGATGGCCTCCTGGCGCTCGACCTGGGTAACGAACTGATCCAC
CTGCGGGCCTGCCTGGAAGGCGCCCGTGGCGTCCTGCGCAAGGCGCGCGACCGCTTCCTCGGGGAACTGGGC
GAACTGCTTGAGGCCGGTCCCGCGGGGCCGCGCAGCGACCGCCTGGAACGGATCAGCCTGCCGTTGCGCGAA
GCCCTGGAGCGCGACGCTCGCCACGACGACGAAGCCAGCCGCCTGGCGCGCGCGGCCCTGGCGCAACTGCTG
TTCACCTGGCAGCAGTGGTGCCATCAGGAGGAAAGCCATGAGTCTGCATGA
Translation:
MPIHWKPFLAPSTLALKFAIKTLLAGGLALWCAFRFDLEQPQWALMTVLIVSQPLSGMVVAKGLFRLLGTLV
GTAMSVLMIALFAQAPWLFLLAISLWLGLCTAASTSLRNHVSYAFVLSGYTVAIIGLPAVDQPLLVFEQAVA
RCTEICLGIICASAVSAILWPQRVEQNLDKQAHATWLLGMQAARGEIDPRQRQPQGLLNALSKIVEVDAQRD
HAWFEGERGRRRAGALALLSRDLLSLLRTARGVARQRARLSDEDERQVERWLAALASALEGTDPASMQALRE
ELAQVAVEPQWSNDQRYLLTRCSVLLLKAVNAEKGMRAVASGEVEGRVGSAGTLSWHRDLQMALFYGARSAL
ALLGLSVYWIYTAWPAASGAMLLAAVVCSLFANRDNAVAIGLSFLRGIVYAIPAAMLVSQWLLPQWNGFPLL
CLAMGVPLFFATLGMAVPVTAGTATSFAIHFIVLVAPRNQMDYDLATLLNSAQGVLIGVGFAVVIFRLLTLR
PGWLTRRLLDATCVDLGRLTRRPLAQAENWFGGRMADRLLRLARHANLLPEQERRRWDDGLLALDLGNELIH
LRACLEGARGVLRKARDRFLGELGELLEAGPAGPRSDRLERISLPLREALERDARHDDEASRLARAALAQLL
FTWQQWCHQEESHESA*
AnnotationID:378GeneID:369
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3305
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04632,COG1289
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66775.1|AE016306_1 (AE016778) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 662

 Score =  668 bits (1724), Expect = 0.0
 Identities = 360/663 (54%), Positives = 450/663 (67%), Gaps = 6/663 (0%)








 
Structural Features:
pfam04632, FUSC, Fusaric acid resistance protein conserved region.
CD-Length = 119 residues, 100.0% aligned
Score =  129 bits (327), Expect = 7e-31
Identities = 57/119 (47%), Positives = 76/119 (63%)

COG1289, Predicted membrane protein
CD-Length = 674 residues,  99.0% aligned
Score =  336 bits (863), Expect = 5e-93
Identities = 224/673 (33%), Positives = 304/673 (45%), Gaps = 20/673 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14121




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17883




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32247




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:369_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:369
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
615
                           PA3305_tr
                           translation of PA3305
                           664
                           99.24
                           99.84
                           0
                           3364.0
     

     
     
28982
                           gb|AAG06693.1|AE004753_1
                           (AE004753) hypothetical protein PA3305 [Pseudomonas aeruginosa PAO1]
                           664
                           99.09
                           99.84
                           0
                           3361.0
     

     
     
28983
                           gb|AAN66775.1|AE016306_1
                           (AE016778) membrane protein, putative [Pseudomonas putida KT2440]
                           666
                           54.05
                           67.71
                           6
                           1729.0
     

     
     
616
                           PA1270_tr
                           translation of PA1270
                           698
                           46.56
                           60.02
                           53
                           1481.0
     

     
     
28984
                           gb|AAG04659.1|AE004556_9
                           (AE004556) hypothetical protein PA1270 [Pseudomonas aeruginosa PAO1]
                           698
                           46.56
                           60.02
                           53
                           1481.0
     

     






      

          
GC ORFID: 43371How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3305Glimmer Score: 

          
Start: 3111870Stop: 3109876

          
Length: 1995


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3305 translation of PA3305Homolog Bit Score 1300.0

          
Other Homologs:  t_PA1270 (ORF: BLASTX 568.0), t_PA3305 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCCATTCACTGGAAGCCGTTCCTGGCACCCTCGACGCTGGCGCTCAAGTTCGCCATCAAGACGCTCCTG 
GCCGGCGGCCTGGCGTTGTGGTGCGCCTTTCGCTTCGACCTGGAGCAGCCGCAATGGGCGCTGATGACCGTG 
CTGATCGTGTCCCAGCCGTTGTCCGGCATGGTGGTGGCGAAGGGCTTGTTCCGCCTGCTCGGCACCCTGGTC 
GGCACCGCGATGTCGGTGCTGATGATCGCGCTGTTCGCCCAGGCGCCCTGGTTGTTCCTGCTGGCCATCTCG 
CTCTGGCTGGGGCTCTGCACGGCGGCCTCGACCTCCCTGCGCAACCACGTTTCCTATGCCTTCGTACTTTCC 
GGCTATACCGTGGCGATCATTGGCCTGCCAGCGGTGGACCAGCCGCTGCTGGTCTTCGAGCAGGCGGTGGCG 
CGTTGTACCGAGATCTGCCTGGGGATCATCTGCGCCTCGGCGGTCAGTGCGATCCTCTGGCCGCAGCGGGTC 
GAGCAGAACCTCGACAAGCAGGCCCACGCCACCTGGCTGCTGGGCATGCAGGCCGCGCGCGGCGAGATCGAC 
CCGCGCCAGCGGCAGCCGCAGGGGCTGCTCAACGCGCTGAGCAAGATCGTCGAGGTCGATGCGCAGCGCGAC 
CATGCCTGGTTCGAGGGCGAGCGCGGGCGGCGCCGGGCCGGCGCCCTGGCGTTGCTCTCGCGCGACCTGCTC 
AGCCTGTTGCGCACCGCGCGCGGCGTGGCCCGGCAACGGGCGCGGCTGAGCGACGAGGATGAGCGCCAGGTG 
GAGCGCTGGCTGGCCGCGCTGGCCAGCGCCCTGGAAGGAACCGATCCGGCGTCGATGCAGGCGCTGCGCGAG 
GAGTTGGCGCAGGTCGCGGTCGAGCCGCAGTGGAGCAACGACCAGCGTTACCTGCTGACCCGCTGCTCGGTG 
CTGCTGCTCAAGGCGGTGAATGCCGAGAAGGGCATGCGCGCGGTGGCCAGCGGCGAGGTCGAGGGGCGGGTG 
GGCAGCGCCGGCACCCTGTCCTGGCACCGCGACCTGCAGATGGCGCTGTTCTACGGCGCGCGTAGCGCCCTG 
GCGTTGCTCGGGCTGTCGGTCTACTGGATCTATACCGCGTGGCCGGCGGCGTCCGGCGCGATGCTGCTGGCG 
GCGGTGGTGTGCAGCCTGTTCGCCAACCGCGACAACGCGGTGGCCATCGGCCTGAGCTTCCTGCGCGGCATC 
GTCTACGCGATCCCGGCGGCGATGCTGGTCAGCCAGTGGCTGCTGCCGCAGTGGAATGGCTTCCCGCTGCTC 
TGCCTGGCGATGGGCGTGCCGCTGTTCTTCGCCACCCTGGGCATGGCCGTACCGGTCACCGCCGGCACCGCC 
ACCTCGTTCGCGATCCACTTCATCGTCCTGGTCGCGCCGCGCAACCAGATGGACTACGACCTCGCGACCCTG 
CTGAATTCCGCCCAGGGCGTGCTGATCGGAGTCGGCTTCGCGGTGGTGATCTTCCGCTTGCTGACCTTGCGT 
CCGGGCTGGCTGACCCGACGCCTGCTGGACGCCACCTGCGTCGACCTCGGCCGCCTCACCCGGCGCCCGCTG 
GCGCAGGCGGAGAACTGGTTCGGCGGGCGCATGGCCGACCGCCTGTTGCGCCTGGCGCGGCACGCCAACCTG 
TTGCCGGAGCAGGAGCGGCGGCGTTGGGACGATGGCCTCCTGGCGCTCGACCTGGGTAACGAACTGATCCAC 
CTGCGGGCCTGCCTGGAAGGCGCCCGTGGCGTCCTGCGCAAGGCGCGCGACCGCTTCCTCGGGGAACTGGGC 
GAACTGCTTGAGGCCGGTCCCGCGGGGCCGCGCAGCGACCGCCTGGAACGGATCAGCCTGCCGTTGCGCGAA 
GCCCTGGAGCGCGACGCTCGCCACGACGACGAAGCCAGCCGCCTGGCGCGCGCGGCCCTGGCGCAACTGCTG 
TTCACCTGGCAGCAGTGGTGCCATCAGGAGGAAAGCCATGAGTCTGCATGA