ViewGene

Locus Name:
GeneID:
Location:

GeneID:3689
TrivialName: PA14_46300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46300
PAO1 Ortholog Locus:PA1402
Sequence Length:666
Protein Length:221
Start: 4118644
Stop: 4119309
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04791.1|AE004569_9 (AE004569) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 219/221 (99%), Positives = 219/221 (99%)
Sequence:
ATGAATACCCTCACCAACGCCCCGCTCGCCGATCTCCTGCAACGCCTGTTCGCCGAAGCCGAGGCCAGCGCA
CCGGGCGACAGTCCCGCCCTCGCCGACCTCTCGGAGGCCGAGCTGAAGCGCCTCATGGGCAGCAAGACCGAA
TACCGCGAGCTCTACGGTCGCCTGAAGGACCTGGCCCTGCCCGTCTCCCGCGAAACCGGCTGCCTGCTCTAC
ATGCTGGCGCGCAGCAGCTCGGCGCGCAGCATCGTCGAGTTCGGCACGTCCTTCGGCCTGTCCACCCTGCAC
CTCGCCGCGGCGCTGCGGGACAACGGCGGCGGCCGCCTGATCGGCAGCGAGTTCGAACCCTCCAAGGCCGAG
CGGGCACGGCACAACCTGGCCGCCGGGGGGCTGCTCGACCTGGTGGAACTGCGCGAGGGCGATGCCCTGCAA
ACCCTCGCCAAGGACCTGCCGGACAGCATCGACCTGGTCCTGCTGGACGGCGCCAAGGCGCTCTACCCGGAG
GTCCTTGCCCTGCTGGAAAGCCGCCTGCGCCCCGGCGCGCTGGTGATCGCCGACAACGCCGAGCATAGTCCC
GAGTACCTGGCCCATGTCCGCTCGCCGGCCAACGGCTACCTGTCGACGCCCTTCGCCGAGGATGTCGAGCTG
TCCATGCGCCTGGGCTGA
Translation:
MNTLTNAPLADLLQRLFAEAEASAPGDSPALADLSEAELKRLMGSKTEYRELYGRLKDLALPVSRETGCLLY
MLARSSSARSIVEFGTSFGLSTLHLAAALRDNGGGRLIGSEFEPSKAERARHNLAAGGLLDLVELREGDALQ
TLAKDLPDSIDLVLLDGAKALYPEVLALLESRLRPGALVIADNAEHSPEYLAHVRSPANGYLSTPFAEDVEL
SMRLG*
AnnotationID:3697GeneID:3689
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 20:08:10
Gene Name:
Confidence Code:3
GeneProduct:putative O-methyltransferase
Cell Localization:()
Synonyms:PA1402
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4122
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG4122, COG4122, Predicted O-methyltransferase
CD-Length = 219 residues,  83.1% aligned
Score =  133 bits (337), Expect = 1e-32
Identities = 73/200 (36%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Genomic Context:
Comment:
ReferenceID:7381
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24523
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37436
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3689_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3689

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5892 PA1402_tr translation of PA1402 221 99.09 99.09 0 1081.0
165063 gb|AAG04791.1|AE004569_9 (AE004569) hypothetical protein PA1402 [Pseudomonas aeruginosa PAO1] 221 99.09 99.09 0 1081.0
165065 dbj|BAB52090.1| (AP003007) hypothetical protein [Mesorhizobium loti] 221 71.94 84.16 3 785.0
165064 dbj|BAC49494.1| (AP005950) bll4229 [Bradyrhizobium japonicum USDA 110] 221 71.49 83.25 0 785.0
165066 emb|CAE28845.1| (BX572604) putative O-methyltransferase [Rhodopseudomonas palustris CGA009] 221 70.58 77.82 5 745.0
GC ORFID: 46691How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1402Glimmer Score:
Start: 835265Stop: 834600
Length: 666
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1402 translation of PA1402Homolog Bit Score 421.0
Other Homologs: t_PA1402 (ORF: GLIMMER)
GC ORF Sequence
ATGAATACCCTCACCAACGCCCCGCTCGCCGATCTCCTGCAACGCCTGTTCGCCGAAGCCGAGGCCAGCGCA
CCGGGCGACAGTCCCGCCCTCGCCGACCTCTCGGAGGCCGAGCTGAAGCGCCTCATGGGCAGCAAGACCGAA
TACCGCGAGCTCTACGGTCGCCTGAAGGACCTGGCCCTGCCCGTCTCCCGCGAAACCGGCTGCCTGCTCTAC
ATGCTGGCGCGCAGCAGCTCGGCGCGCAGCATCGTCGAGTTCGGCACGTCCTTCGGCCTGTCCACCCTGCAC
CTCGCCGCGGCGCTGCGGGACAACGGCGGCGGCCGCCTGATCGGCAGCGAGTTCGAACCCTCCAAGGCCGAG
CGGGCACGGCACAACCTGGCCGCCGGGGGGCTGCTCGACCTGGTGGAACTGCGCGAGGGCGATGCCCTGCAA
ACCCTCGCCAAGGACCTGCCGGACAGCATCGACCTGGTCCTGCTGGACGGCGCCAAGGCGCTCTACCCGGAG
GTCCTTGCCCTGCTGGAAAGCCGCCTGCGCCCCGGCGCGCTGGTGATCGCCGACAACGCCGAGCATAGTCCC
GAGTACCTGGCCCATGTCCGCTCGCCGGCCAACGGCTACCTGTCGACGCCCTTCGCCGAGGATGTCGAGCTG
TCCATGCGCCTGGGCTGA