ViewGene
Locus Name:
GeneID:
Location:

GeneID:3688
TrivialName: PA14_71510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71510
PAO1 Ortholog Locus:PA5419
Sequence Length:636
Protein Length:211
Start: 6373059
Stop: 6373694
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08804.1|AE004954_6 (AE004954) sarcosine oxidase gamma subunit [Pseudomonas aeruginosa PAO1]
Identities = 211/211 (100%), Positives = 211/211 (100%)
Sequence:
ATGAGCAAGGCAAACGTCTACCAGCAACGCCCCGAACCCGGCGTCCACGCCGAATCGCCTCTGCACCATGCC
GAGCTGCACAAGCTCGCCGGCAAGACCGCCGCGAAGGCCGGTATCGTGCTGCGCGAGAAGAAGCTGCTCGGC
CACCTGGTGCTGCGCGGCGATGCCGCCGACCCGGCCTTCGCCGCCGCCGTGCACCAGGCCCTCGGCCTGGAA
CTGCCGGTGGCCCTGACCCTGGTCGCCAGCGGCGAGACCTCGCTGCAATGGCTGGCCCCGGACGAATGGTTG
CTGATCGTCCCCGGCGGCGAGGAATATGCCGTCGAACAGCGCCTGCGCCAGGCCCTGGGCGAGGAGCTGCAC
TACGCGGTGGTCAACGTCAGCGGCGGGCAGACGCTGCTCGAACTGAGCGGAGCGAACGTCCGCGAACTGCTG
ATGAAATCCACCAGCTACGACGTGCATCCGAGCAACTTCCCGGTGGGCAAGGCGGTCGGCAGCATCTTCGCC
AAGTCGCAATGCGTGATCCGCCATACCGGCGAGGACACCTGGGAGCTGGTCGTGCGCCGCAGCTTCGCCGAC
TACTTCTGGCTCTGGTTGCAGGACGCCAGCGCCGAATACGGCCTGCAGGTAGCGGCATGA
Translation:
MSKANVYQQRPEPGVHAESPLHHAELHKLAGKTAAKAGIVLREKKLLGHLVLRGDAADPAFAAAVHQALGLE
LPVALTLVASGETSLQWLAPDEWLLIVPGGEEYAVEQRLRQALGEELHYAVVNVSGGQTLLELSGANVRELL
MKSTSYDVHPSNFPVGKAVGSIFAKSQCVIRHTGEDTWELVVRRSFADYFWLWLQDASAEYGLQVAA*
AnnotationID:3696GeneID:3688
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 14:02:22
Gene Name:soxG
Confidence Code:2
GeneProduct:sarcosine oxidase gamma subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4583,pfam04268
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:1.5.3.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54001.1| (AE016857) sarcosine oxidase, gamma subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 210

 Score =  311 bits (796), Expect = 2e-84
 Identities = 153/211 (72%), Positives = 175/211 (82%), Gaps = 1/211 (0%)

>gb|AAN65957.1|AE016224_1 (AE016775) sarcosine oxidase, gamma subunit [Pseudomonas putida
           KT2440]
          Length = 210

 Score =  301 bits (772), Expect = 1e-81
 Identities = 149/211 (70%), Positives = 171/211 (81%), Gaps = 1/211 (0%)






 
Structural Features:
COG4583, Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
CD-Length = 189 residues, 100.0% aligned
Score =  182 bits (464), Expect = 2e-47
Identities = 80/195 (41%), Positives = 109/195 (55%), Gaps = 7/195 (3%)

pfam04268, SoxG, Sarcosine oxidase, gamma subunit family. 
CD-Length = 148 residues, 100.0% aligned
Score =  171 bits (434), Expect = 7e-44
Identities = 67/152 (44%), Positives = 88/152 (57%), Gaps = 4/152 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7379




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24521




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34689




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3688_cdd.html


    		




 
URL:

















    ReferenceID:35641




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:35643




  
Author/Investigator(s):
        Rother D, Henrich HJ, Quentmeier A, Bardischewsky F, Friedrich CG.





  
Title:
        Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.




  
PubMed:
        11443084


MedLine:
        




    
Source:
J Bacteriol. 2001 Aug;183(15):4499-508.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11443084

















    ReferenceID:35644




  
Author/Investigator(s):
        Chlumsky LJ, Zhang L, Jorns MS.





  
Title:
        Sequence analysis of sarcosine oxidase and nearby genes reveals homologies with key enzymes of folate one-carbon metabolism.




  
PubMed:
        7543100


MedLine:
        




    
Source:
J Biol Chem. 1995 Aug 4;270(31):18252-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7543100









           
Homologs By Global Alignment 

           

       



     
Gene ID:3688
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5891
                           PA5419_tr
                           translation of PA5419
                           211
                           99.99
                           99.99
                           0
                           1085.0
     

     
     
165060
                           gb|AAG08804.1|AE004954_6
                           (AE004954) sarcosine oxidase gamma subunit [Pseudomonas aeruginosa PAO1]
                           211
                           99.99
                           99.99
                           0
                           1085.0
     

     
     
165061
                           gb|AAO54001.1|
                           (AE016857) sarcosine oxidase, gamma subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           211
                           72.51
                           82.93
                           1
                           798.0
     

     
     
165062
                           gb|AAN65957.1|AE016224_1
                           (AE016775) sarcosine oxidase, gamma subunit [Pseudomonas putida KT2440]
                           211
                           70.61
                           81.04
                           1
                           774.0
     

     






      

          
GC ORFID: 46690How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5419Glimmer Score: 

          
Start: 5636748Stop: 5637383

          
Length: 636


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5419 translation of PA5419Homolog Bit Score 422.0

          
Other Homologs:  t_PA5419 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGGCAAACGTCTACCAGCAACGCCCCGAACCCGGCGTCCACGCCGAATCGCCTCTGCACCATGCC 
GAGCTGCACAAGCTCGCCGGCAAGACCGCCGCGAAGGCCGGTATCGTGCTGCGCGAGAAGAAGCTGCTCGGC 
CACCTGGTGCTGCGCGGCGATGCCGCCGACCCGGCCTTCGCCGCCGCCGTGCACCAGGCCCTCGGCCTGGAA 
CTGCCGGTGGCCCTGACCCTGGTCGCCAGCGGCGAGACCTCGCTGCAATGGCTGGCCCCGGACGAATGGTTG 
CTGATCGTCCCCGGCGGCGAGGAATATGCCGTCGAACAGCGCCTGCGCCAGGCCCTGGGCGAGGAGCTGCAC 
TACGCGGTGGTCAACGTCAGCGGCGGGCAGACGCTGCTCGAACTGAGCGGAGCGAACGTCCGCGAACTGCTG 
ATGAAATCCACCAGCTACGACGTGCATCCGAGCAACTTCCCGGTGGGCAAGGCGGTCGGCAGCATCTTCGCC 
AAGTCGCAATGCGTGATCCGCCATACCGGCGAGGACACCTGGGAGCTGGTCGTGCGCCGCAGCTTCGCCGAC 
TACTTCTGGCTCTGGTTGCAGGACGCCAGCGCCGAATACGGCCTGCAGGTAGCGGCATGA