ViewGene

Locus Name:
GeneID:
Location:

GeneID:3687
TrivialName: PA14_65710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65710
PAO1 Ortholog Locus:PA4971
Sequence Length:618
Protein Length:205
Start: 5852110
Stop: 5851493
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08356.1|AE004910_3 (AE004910) adenosine diphosphate sugar pyrophosphatase [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
ATGTCCGAAACCTTCAAACCCGCCCCCGGTGACGTCGAGCTCGTGCAGCGCGAGGAATGCTTCCGCGGCTTC
TATCGTCTCGATCGCCTGCGCCTGCGGCATCGCCAGTTCGACGGCAGCATGGGCCGGGAAATCAGTCGGGAA
CTGTTCGTCCGCCATGACGCGGTCTGCGTGCTGCCCTACGACCCGCAGCGCGATTGCGTGGTGCTCATCGAG
CAATTCCGTGTCGGGGCGATGCAGAAGCTCGCCAACCCCTGGCTGCTGGAGCTGGTCGCCGGCCTGATCGAC
AAGGACGAGCAACCGGAGGAAGTGGCCCATCGCGAGGCGATGGAGGAGGCCGGGCTGACCCTCGGTGCGCTC
TGGCCGATAACCCAGTACCTGCCGTCGCCGGGCGGCACCGACGAAGTGGTGCACCTGTTCGTCGGCCGTTGC
GACAGCGAAGGCGTCGGCGGCGTGCATGGCTTGCCGGAGGAGGGCGAGGACATCCGCGTCCACGTCTGGCCG
TTGGAAGATGCGCTGCAGGCCGTGCGCGACGGGCGGATCAACAACGCGGCGAGCATCATCGCCCTGCAGTGG
CTGGCCCTGAACCGGGCCGAGGTGCGTGGGCTATGGGCCTGA
Translation:
MSETFKPAPGDVELVQREECFRGFYRLDRLRLRHRQFDGSMGREISRELFVRHDAVCVLPYDPQRDCVVLIE
QFRVGAMQKLANPWLLELVAGLIDKDEQPEEVAHREAMEEAGLTLGALWPITQYLPSPGGTDEVVHLFVGRC
DSEGVGGVHGLPEEGEDIRVHVWPLEDALQAVRDGRINNAASIIALQWLALNRAEVRGLWA*
AnnotationID:3695GeneID:3687
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 08:08:15
Gene Name:aspP
Confidence Code:2
GeneProduct:adenosine diphosphate sugar pyrophosphatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:MutT/nudix family protein
Functional Category Confidence Code:5
COGs:pfam00293,COG0494
Secondary Functional Category(ies):energy metabolism
EC Number:3.6.1.21
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70486.1|AE016690_2 (AE016792) MutT/nudix family protein [Pseudomonas putida KT2440]
          Length = 209

 Score =  328 bits (840), Expect = 2e-89
 Identities = 155/204 (75%), Positives = 173/204 (84%)

>gb|AAO58401.1| (AE016874) mutT/nudix family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 205

 Score =  310 bits (795), Expect = 3e-84
 Identities = 142/205 (69%), Positives = 173/205 (84%)

>emb|CAD86382.1| (BX321864) NUDIX hydrolase:Conserved hypothetical protein 52
           [Nitrosomonas europaea ATCC 19718]
          Length = 200

 Score =  216 bits (550), Expect = 7e-56
 Identities = 108/196 (55%), Positives = 142/196 (72%), Gaps = 2/196 (1%)
Structural Features:
pfam00293, NUDIX, NUDIX domain.
CD-Length = 133 residues,  92.5% aligned
Score = 58.7 bits (141), Expect = 5e-10
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes 
[DNA replication, recombination, and repair]
CD-Length = 161 residues,  98.1% aligned
Score = 41.9 bits (96), Expect = 6e-05
Genomic Context:
Comment:
ReferenceID:7377
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24519
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35095
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3687_cdd.html
URL:
ReferenceID:35884
Author/Investigator(s): Moreno-Bruna B, Baroja-Fernandez E, Munoz FJ, Bastarrica-Berasategui A, Zandueta-Criado A, Rodriguez-Lopez M, Lasa I, Akazawa T, Pozueta-Romero J.
Title: Adenosine diphosphate sugar pyrophosphatase prevents glycogen biosynthesis in Escherichia coli.
PubMed: 11416161
MedLine:
Source:
Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):8128-32. Epub 2001 Jun 19.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11416161
Homologs By Global Alignment
Gene ID:3687

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5890 PA4971_tr translation of PA4971 205 99.99 99.99 0 1085.0
165032 gb|AAG08356.1|AE004910_3 (AE004910) adenosine diphosphate sugar pyrophosphatase [Pseudomonas aeruginosa PAO1] 205 99.99 99.99 0 1085.0
165034 gb|AAP70395.1| (AY236225) Uvs097 [uncultured bacterium] 205 75.12 84.39 0 823.0
165033 gb|AAN70486.1|AE016690_2 (AE016792) MutT/nudix family protein [Pseudomonas putida KT2440] 209 74.16 82.77 4 839.0
165035 gb|AAO58401.1| (AE016874) mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000] 205 69.26 84.39 0 795.0
GC ORFID: 46689How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4971Glimmer Score:
Start: 5115792Stop: 5115175
Length: 618
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4971 translation of PA4971Homolog Bit Score 422.0
Other Homologs: t_PA4971 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGAAACCTTCAAACCCGCCCCCGGTGACGTCGAGCTCGTGCAGCGCGAGGAATGCTTCCGCGGCTTC
TATCGTCTCGATCGCCTGCGCCTGCGGCATCGCCAGTTCGACGGCAGCATGGGCCGGGAAATCAGTCGGGAA
CTGTTCGTCCGCCATGACGCGGTCTGCGTGCTGCCCTACGACCCGCAGCGCGATTGCGTGGTGCTCATCGAG
CAATTCCGTGTCGGGGCGATGCAGAAGCTCGCCAACCCCTGGCTGCTGGAGCTGGTCGCCGGCCTGATCGAC
AAGGACGAGCAACCGGAGGAAGTGGCCCATCGCGAGGCGATGGAGGAGGCCGGGCTGACCCTCGGTGCGCTC
TGGCCGATAACCCAGTACCTGCCGTCGCCGGGCGGCACCGACGAAGTGGTGCACCTGTTCGTCGGCCGTTGC
GACAGCGAAGGCGTCGGCGGCGTGCATGGCTTGCCGGAGGAGGGCGAGGACATCCGCGTCCACGTCTGGCCG
TTGGAAGATGCGCTGCAGGCCGTGCGCGACGGGCGGATCAACAACGCGGCGAGCATCATCGCCCTGCAGTGG
CTGGCCCTGAACCGGGCCGAGGTGCGTGGGCTATGGGCCTGA