ViewGene
Locus Name:
GeneID:
Location:

GeneID:3684
TrivialName: PA14_18900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18900
PAO1 Ortholog Locus:PA3493
Sequence Length:645
Protein Length:214
Start: 1629852
Stop: 1629208
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06881.1|AE004770_6 (AE004770) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 214/214 (100%), Positives = 214/214 (100%)
Sequence:
ATGGACGCCGCGACTCGCCGTTCGATGCTGCGCAATGCCCTCCTGCTCGGGCTCTTCGCCCTGGTCGGAGTG
GGCCTGGTAGCACTGGTGCAGCAATTCACCGAAGCGCGCATCGCCGAAGCCCAGCGCGAGGCGCGCGGCCGC
GCCCTGCTGGAACTGCTGCCGCCGGGCAGCTACGACAACCATCCGCTGGACAGCCAGGTGCCAACCTTCGCG
CCGAAGCTGCTCGGCCTGGATGCGCCGCGTCCGGCCTATGTCGCCCGCCTGCACGGCCAGGCCAGCGCAGTG
ATCCTCCAGGCCAGCGCGCCGGATGGCTACAGCGGCGCCATCCAGCTACTGGTCGGGGTCACCGCCCAGGGC
CGGCTGCTCGGCGTACGGGTCGTCGCGCACAAGGAAACCCCCGGCCTCGGCGACCGCATCGAACTGGCCAAG
AGTCCCTGGGTGCACGGTTTCGACGGCAAGAGCCTGGGCGATCCGGCGGACGCCGGCTGGGCGGTGAAGAAG
GACGGCGGTACGTTCGACCAGTTCGCCGGCGCCACCGTCACCCCGCGCGCCGTGGTCCGCGCCGTGCACAAG
GCGCTGCGCTACTTCGACGCCAACCGCGAACGCCTGCTCGCCCCCGAAGAGGCTGCCGGACATGAGTGA
Translation:
MDAATRRSMLRNALLLGLFALVGVGLVALVQQFTEARIAEAQREARGRALLELLPPGSYDNHPLDSQVPTFA
PKLLGLDAPRPAYVARLHGQASAVILQASAPDGYSGAIQLLVGVTAQGRLLGVRVVAHKETPGLGDRIELAK
SPWVHGFDGKSLGDPADAGWAVKKDGGTFDQFAGATVTPRAVVRAVHKALRYFDANRERLLAPEEAAGHE*
AnnotationID:3692GeneID:3684
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 13:01:53
Gene Name:
Confidence Code:3
GeneProduct:putative NADH:ubiquinone oxidoreductase, subunit RnfG
Cell Localization:()
Synonyms:rnfG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative lectron transport complex protein RnfG
Functional Category Confidence Code:5
COGs:pfam04205,COG4659
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF94174.1| (AE004183) RnfG-related protein [Vibrio cholerae]
          Length = 209

 Score =  162 bits (411), Expect = 1e-39
 Identities = 85/194 (43%), Positives = 124/194 (63%), Gaps = 1/194 (0%)

>gb|AAL20377.1| (AE008763) putative Na+-transporting NADH:ubiquinone oxidoreductase
           gamma subunit [Salmonella typhimurium LT2]
          Length = 206

 Score =  158 bits (399), Expect = 2e-38
 Identities = 86/193 (44%), Positives = 119/193 (61%), Gaps = 2/193 (1%)






 
Structural Features:
pfam04205, FMN_bind, FMN-binding domain. 
CD-Length = 97 residues,  99.0% aligned
Score =  108 bits (271), Expect = 6e-25
Identities = 53/99 (53%), Positives = 66/99 (66%), Gaps = 4/99 (4%)

COG4659, RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG 
[Energy production and conversion]
CD-Length = 195 residues, 100.0% aligned
Score =  251 bits (643), Expect = 4e-68
Identities = 99/197 (50%), Positives = 128/197 (64%), Gaps = 2/197 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7371




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24513




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32051




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3684_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3684
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5887
                           PA3493_tr
                           translation of PA3493
                           214
                           99.99
                           99.99
                           0
                           1086.0
     

     
     
164493
                           gb|AAG06881.1|AE004770_6
                           (AE004770) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           214
                           99.99
                           99.99
                           0
                           1086.0
     

     
     
164494
                           gb|AAN55543.1|AE015693_5
                           (AE015693) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           218
                           45.87
                           61.92
                           10
                           439.0
     

     
     
164503
                           dbj|BAB35763.1|
                           (AP002558) hypothetical protein [Escherichia coli O157:H7]
                           215
                           44.65
                           57.67
                           10
                           404.0
     

     
     
164502
                           gb|AAG56620.1|AE005386_11
                           (AE005386) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
                           215
                           44.65
                           57.67
                           10
                           404.0
     

     






      

          
GC ORFID: 46686How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3493Glimmer Score: 

          
Start: 3324082Stop: 3324726

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3493 translation of PA3493Homolog Bit Score 422.0

          
Other Homologs:  t_PA3493 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGCCGCGACTCGCCGTTCGATGCTGCGCAATGCCCTCCTGCTCGGGCTCTTCGCCCTGGTCGGAGTG 
GGCCTGGTAGCACTGGTGCAGCAATTCACCGAAGCGCGCATCGCCGAAGCCCAGCGCGAGGCGCGCGGCCGC 
GCCCTGCTGGAACTGCTGCCGCCGGGCAGCTACGACAACCATCCGCTGGACAGCCAGGTGCCAACCTTCGCG 
CCGAAGCTGCTCGGCCTGGATGCGCCGCGTCCGGCCTATGTCGCCCGCCTGCACGGCCAGGCCAGCGCAGTG 
ATCCTCCAGGCCAGCGCGCCGGATGGCTACAGCGGCGCCATCCAGCTACTGGTCGGGGTCACCGCCCAGGGC 
CGGCTGCTCGGCGTACGGGTCGTCGCGCACAAGGAAACCCCCGGCCTCGGCGACCGCATCGAACTGGCCAAG 
AGTCCCTGGGTGCACGGTTTCGACGGCAAGAGCCTGGGCGATCCGGCGGACGCCGGCTGGGCGGTGAAGAAG 
GACGGCGGTACGTTCGACCAGTTCGCCGGCGCCACCGTCACCCCGCGCGCCGTGGTCCGCGCCGTGCACAAG 
GCGCTGCGCTACTTCGACGCCAACCGCGAACGCCTGCTCGCCCCCGAAGAGGCTGCCGGACATGAGTGA