ViewGene

Locus Name:
GeneID:
Location:

GeneID:3683
TrivialName: PA14_50020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50020
PAO1 Ortholog Locus:PA1111
Sequence Length:624
Protein Length:207
Start: 4447014
Stop: 4446391
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04500.1|AE004541_5 (AE004541) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/207 (99%), Positives = 206/207 (99%)
Sequence:
ATGCAGTCACGCCTGATCGATGGCCTGGAATGGGACCTGGACGAGGATGGCAGCGGCGGCCTGTGCAACGCC
AATGGCGACAAGGTCCATCTGCGCCAGGGCGACATGGACGGCGCCTGCGGGCCCTACTGTCTGGTCATGGCG
ATGCTGGTCCGCGGCCAACTGCGCCGGCGCCAGGCCAAGGGCCTGGAGCGGGTCGACAGTCGCAGTCGCTAC
GGGCGCCTGATGAAGGCGCTGGACCAGCACGGCCCGCTGCTGCGCGTCGGCACCACCGGCGTCGACCTGCTG
GAGCTGCTGGCCGAGATCAACGATACCGAGCATTTCGCCCTCAAGGGCGAGGGGCGCAGGTTGGTCCGGCAC
ACCCGCGAATACCTGGAGGCCGGCTTTCCGGTAGTGCTCGGTTTCCACGGCCGCAAGGGCAGCGATATCCGC
CATTGGGGCCTGGCCATCGGCATGAGCGAGCGCGCCTTCCTGCTCCTCGACCCGGCCCACGACCTGCCGCGC
GGGCAGGCCTGGAACGCGGTGATCACCAGCGAGGCGCACGGTTCCCGGTTCGGCTATCGCTATATCAATGCC
AAGGGCACCTGGGCGGTGACCCTCAAGGAAATGGTCGCCTTGCTTTGA
Translation:
MQSRLIDGLEWDLDEDGSGGLCNANGDKVHLRQGDMDGACGPYCLVMAMLVRGQLRRRQAKGLERVDSRSRY
GRLMKALDQHGPLLRVGTTGVDLLELLAEINDTEHFALKGEGRRLVRHTREYLEAGFPVVLGFHGRKGSDIR
HWGLAIGMSERAFLLLDPAHDLPRGQAWNAVITSEAHGSRFGYRYINAKGTWAVTLKEMVALL*
AnnotationID:3691GeneID:3683
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 13:01:55
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1111
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7369
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24511
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3683

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5886 PA1111_tr translation of PA1111 207 99.03 99.51 0 1084.0
164491 gb|AAG04500.1|AE004541_5 (AE004541) hypothetical protein PA1111 [Pseudomonas aeruginosa PAO1] 207 99.03 99.51 0 1084.0
164492 dbj|BAC81750.1| (AB079768) hydrophobic compound transport factor [Pseudomonas aeruginosa] 207 99.03 99.51 0 1084.0
GC ORFID: 46685How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1111Glimmer Score:
Start: 506894Stop: 507517
Length: 624
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1111 translation of PA1111Homolog Bit Score 422.0
Other Homologs: t_PA1111 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGTCACGCCTGATCGATGGCCTGGAATGGGACCTGGACGAGGATGGCAGCGGCGGCCTGTGCAACGCC
AATGGCGACAAGGTCCATCTGCGCCAGGGCGACATGGACGGCGCCTGCGGGCCCTACTGTCTGGTCATGGCG
ATGCTGGTCCGCGGCCAACTGCGCCGGCGCCAGGCCAAGGGCCTGGAGCGGGTCGACAGTCGCAGTCGCTAC
GGGCGCCTGATGAAGGCGCTGGACCAGCACGGCCCGCTGCTGCGCGTCGGCACCACCGGCGTCGACCTGCTG
GAGCTGCTGGCCGAGATCAACGATACCGAGCATTTCGCCCTCAAGGGCGAGGGGCGCAGGTTGGTCCGGCAC
ACCCGCGAATACCTGGAGGCCGGCTTTCCGGTAGTGCTCGGTTTCCACGGCCGCAAGGGCAGCGATATCCGC
CATTGGGGCCTGGCCATCGGCATGAGCGAGCGCGCCTTCCTGCTCCTCGACCCGGCCCACGACCTGCCGCGC
GGGCAGGCCTGGAACGCGGTGATCACCAGCGAGGCGCACGGTTCCCGGTTCGGCTATCGCTATATCAATGCC
AAGGGCACCTGGGCGGTGACCCTCAAGGAAATGGTCGCCTTGCTTTGA