ViewGene

Locus Name:
GeneID:
Location:

GeneID:3682
TrivialName: PA14_01390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01390
PAO1 Ortholog Locus:PA0114
Sequence Length:636
Protein Length:211
Start: 133174
Stop: 133809
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03504.1|AE004449_13 (AE004449) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 211/211 (100%), Positives = 211/211 (100%)
Sequence:
ATGACTCGAGTCAACAAGACCGTCCTCGTCCTCGTCGCCCTGGTCGCCCTGGTCCTCGGCCTCACCGTGCAC
AAGGTGCTCACCGCCCAGCGCCAGGCCGATCCCACCGTGCTGCTCGACGCCGGCATCGTGATCCTGCCGCAG
ACGCGCAAGGTGCCGGCGCTGGAGTTCACCAACCAGGACGGCCAGGCGGTCAGCACCGCCAGTCTCAAGGGT
CGCTGGCACCTGCTGTTCTTCGGCTACACCTTCTGCCCCGATGTCTGCCCGACCACCCTCGCCCAGCTCCGC
GAATTGCAGGGCAAGCTGCCGCAGGAGGTGCGCGACGACCTGCAGGTGGTATTCGTCAGCGTCGATCCGAAC
CGCGACACGCCGCAGCAGATCAAGCAATACCTGGGCTACTTCAACGCCGGCTTCCAGGGGCTCACCGGTACT
CCGGAGAACATCCAGAAGCTGGCCAACGCCATGAGCATCCCCTACATCCCCGCCGACACCAGCAAGCCCAAC
TACACCGTCGACCACAGCGGCAACCTGGTGATCATCGGTCCGGACGGCGAGCAGCACGGCTTCATCCGCGCG
CCGCTGAACAACGCCAAGCTGGAAGCCCAACTGCCCGGCGTGCTCAAGCCGCAGGCCTGA
Translation:
MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIVILPQTRKVPALEFTNQDGQAVSTASLKG
RWHLLFFGYTFCPDVCPTTLAQLRELQGKLPQEVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGT
PENIQKLANAMSIPYIPADTSKPNYTVDHSGNLVIIGPDGEQHGFIRAPLNNAKLEAQLPGVLKPQA*
AnnotationID:3690GeneID:3682
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative Sco1/SenC family protein
Cell Localization:()
Synonyms:PA0114
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1999
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65745.1|AE016200_9 (AE016774) Sco1/SenC family protein [Pseudomonas putida KT2440]
          Length = 210

 Score =  294 bits (753), Expect = 2e-79
 Identities = 140/208 (67%), Positives = 169/208 (81%)

>gb|AAO58685.1| (AE016875) Sco1/SenC family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 210

 Score =  258 bits (658), Expect = 2e-68
 Identities = 122/208 (58%), Positives = 162/208 (77%)

>emb|CAA81131.2| (Z26044) scoP [Pseudomonas stutzeri]
          Length = 204

 Score =  201 bits (511), Expect = 2e-51
 Identities = 91/175 (52%), Positives = 127/175 (72%), Gaps = 1/175 (0%)
Structural Features:
COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis 
of respiratory and photosynthetic systems
CD-Length = 207 residues,  99.5% aligned
Score =  177 bits (449), Expect = 1e-45
Identities = 81/212 (38%), Positives = 112/212 (52%), Gaps = 8/212 (3%)
Genomic Context:
Comment:
ReferenceID:7367
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24509
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33482
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3682_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3682

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5885 PA0114_tr translation of PA0114 211 99.99 99.99 0 1087.0
164485 gb|AAG03504.1|AE004449_13 (AE004449) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 211 99.99 99.99 0 1087.0
164486 gb|AAN65745.1|AE016200_9 (AE016774) Sco1/SenC family protein [Pseudomonas putida KT2440] 211 66.35 80.09 1 751.0
164487 gb|AAO58685.1| (AE016875) Sco1/SenC family protein [Pseudomonas syringae pv. tomato str. DC3000] 211 57.81 76.77 1 656.0
164488 emb|CAA81131.2| (Z26044) scoP [Pseudomonas stutzeri] 215 44.65 65.58 15 513.0
GC ORFID: 46684How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0114Glimmer Score:
Start: 5934513Stop: 5935148
Length: 636
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0114 translation of PA0114Homolog Bit Score 423.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3883 (ORF: BLASTX 263.0), t_PA0114 (ORF: GLIMMER)
GC ORF Sequence
ATGACTCGAGTCAACAAGACCGTCCTCGTCCTCGTCGCCCTGGTCGCCCTGGTCCTCGGCCTCACCGTGCAC
AAGGTGCTCACCGCCCAGCGCCAGGCCGATCCCACCGTGCTGCTCGACGCCGGCATCGTGATCCTGCCGCAG
ACGCGCAAGGTGCCGGCGCTGGAGTTCACCAACCAGGACGGCCAGGCGGTCAGCACCGCCAGTCTCAAGGGT
CGCTGGCACCTGCTGTTCTTCGGCTACACCTTCTGCCCCGATGTCTGCCCGACCACCCTCGCCCAGCTCCGC
GAATTGCAGGGCAAGCTGCCGCAGGAGGTGCGCGACGACCTGCAGGTGGTATTCGTCAGCGTCGATCCGAAC
CGCGACACGCCGCAGCAGATCAAGCAATACCTGGGCTACTTCAACGCCGGCTTCCAGGGGCTCACCGGTACT
CCGGAGAACATCCAGAAGCTGGCCAACGCCATGAGCATCCCCTACATCCCCGCCGACACCAGCAAGCCCAAC
TACACCGTCGACCACAGCGGCAACCTGGTGATCATCGGTCCGGACGGCGAGCAGCACGGCTTCATCCGCGCG
CCGCTGAACAACGCCAAGCTGGAAGCCCAACTGCCCGGCGTGCTCAAGCCGCAGGCCTGA