ViewGene

Locus Name:
GeneID:
Location:

GeneID:3681
TrivialName: PA14_71450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71450
PAO1 Ortholog Locus:PA5414
Sequence Length:642
Protein Length:213
Start: 6366732
Stop: 6366091
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08799.1|AE004954_1 (AE004954) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 212/213 (99%), Positives = 212/213 (99%)
Sequence:
ATGAAACGCCCGCTGATCTTCCTTTCCGCCGTGCTGCTCGGCGCATCCCTGCAAGGGTGCGGGGGCGGCGAT
GAAAAGCAGGCCGCCGCGCCTGCGCTGCCGGCCGATTCCTGCACCGGCCATGAACTCGAAGTGGCCTTGCCG
CCGGCCGGCAAGCCACTGTTCGGCTACGACTTCCTCTCCCGCCAGTGCGGCTACAACGATGCCACCGTGGTC
TTCGGCGCCGCCGACGGCAGCAAGCGCCTGGAGATCGTCCTCACCGACACCGGCCTGCCGGCGCCGCCGACC
GAGGGCGACGCGGTGGCCTATCGGGCGGCGCAGGACAAGCTGCGCGAGATGACCCAGACCAACCTGACCCTG
CTCCACAAGACCCGCGAGACCGCCCTGAAGAACGGCACCGCCGAGCGCTTCGGCGGCGAGGACTACCTGCCG
CTGATCGATACCACGCGAATGGGCGACCCGTTGGGGGTGATGGTCCCGGCCAAGGGCGAGGAGGGCGTCTCG
ACCCTCAGCGGAGTGATCAAGAACCGCTACGTACTGACCCTCAGCACCCGCGACATGCCCAATGGCGGCAGC
GCCACGGCGATGCGCCAGGTGCTGGTGCCGTTCGTCGAGCAGATGAAGCTGACCAAGCTACCCTGA
Translation:
MKRPLIFLSAVLLGASLQGCGGGDEKQAAAPALPADSCTGHELEVALPPAGKPLFGYDFLSRQCGYNDATVV
FGAADGSKRLEIVLTDTGLPAPPTEGDAVAYRAAQDKLREMTQTNLTLLHKTRETALKNGTAERFGGEDYLP
LIDTTRMGDPLGVMVPAKGEEGVSTLSGVIKNRYVLTLSTRDMPNGGSATAMRQVLVPFVEQMKLTKLP*
AnnotationID:3689GeneID:3681
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5414
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7365
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24507
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3681

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5884 PA5414_tr translation of PA5414 213 99.53 99.53 0 1087.0
164484 gb|AAG08799.1|AE004954_1 (AE004954) hypothetical protein PA5414 [Pseudomonas aeruginosa PAO1] 213 99.53 99.53 0 1087.0
GC ORFID: 46683How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5414Glimmer Score:
Start: 5630421Stop: 5629780
Length: 642
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5414 translation of PA5414Homolog Bit Score 423.0
Other Homologs: t_PA5414 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACGCCCGCTGATCTTCCTTTCCGCCGTGCTGCTCGGCGCATCCCTGCAAGGGTGCGGGGGCGGCGAT
GAAAAGCAGGCCGCCGCGCCTGCGCTGCCGGCCGATTCCTGCACCGGCCATGAACTCGAAGTGGCCTTGCCG
CCGGCCGGCAAGCCACTGTTCGGCTACGACTTCCTCTCCCGCCAGTGCGGCTACAACGATGCCACCGTGGTC
TTCGGCGCCGCCGACGGCAGCAAGCGCCTGGAGATCGTCCTCACCGACACCGGCCTGCCGGCGCCGCCGACC
GAGGGCGACGCGGTGGCCTATCGGGCGGCGCAGGACAAGCTGCGCGAGATGACCCAGACCAACCTGACCCTG
CTCCACAAGACCCGCGAGACCGCCCTGAAGAACGGCACCGCCGAGCGCTTCGGCGGCGAGGACTACCTGCCG
CTGATCGATACCACGCGAATGGGCGACCCGTTGGGGGTGATGGTCCCGGCCAAGGGCGAGGAGGGCGTCTCG
ACCCTCAGCGGAGTGATCAAGAACCGCTACGTACTGACCCTCAGCACCCGCGACATGCCCAATGGCGGCAGC
GCCACGGCGATGCGCCAGGTGCTGGTGCCGTTCGTCGAGCAGATGAAGCTGACCAAGCTACCCTGA