ViewGene

Locus Name:
GeneID:
Location:

GeneID:3680
TrivialName: PA14_28910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28910
PAO1 Ortholog Locus:PA2726
Sequence Length:639
Protein Length:212
Start: 2500888
Stop: 2500250
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06114.1|AE004700_10 (AE004700) probable radical activating enzyme [Pseudomonas aeruginosa PAO1]
Identities = 208/212 (98%), Positives = 211/212 (99%)
Sequence:
ATGGAACTGAGCCTGTCGCGGGTGCATTTCCCGGTGACCACCCTGGGCCCGGGACGGCGCCTGGGCATCTGG
TTCCAGGGCTGTAGCATCCGCTGCCCCGGCTGCATCTCCGCCGATACCTGGGGGCCGGGACGGCAGCGCATC
GCCCTGGCACGCCTGCTCGCCGACATCCAGCCATGGCTGGAGCAGGCCGAGGGCATCACCGTCTCCGGCGGC
GAACCCTTCGAGCAGTTCGCTGCCCTCCTCGCCCTGCTCGGCGAACTGCGCCAGCGCAGCCGCGCCGACATC
CTGGTCTACAGCGGCTACCCGCTGGAGCATCTGCACGTGCAACTGGAACAGGCCGCCGGGCTGATCGACGCG
CTGATCAGCGACCCCTACCAACAGCACGCCGAACAGAGCCTGGCCCTGCGCGGCAGCGACAACCAGCGCCTG
AGCCTGCTCACCGAACTCGGCCGCGCGCGCCTCGGCGGCTACCAGCGGCCACTGCGCGAAGACGACAAGGCC
CTCGACCTGATGTTCGACCACGACGGCAGCGTGTGGATGGCCGGCATCCCGCGCCGCGACGACCTGCTGCGG
CTACAGGACCTGCTGCGCGACCAGGGCCACCAACTTAGCGTCAGCGCCCATCGGCCGCGCTGA
Translation:
MELSLSRVHFPVTTLGPGRRLGIWFQGCSIRCPGCISADTWGPGRQRIALARLLADIQPWLEQAEGITVSGG
EPFEQFAALLALLGELRQRSRADILVYSGYPLEHLHVQLEQAAGLIDALISDPYQQHAEQSLALRGSDNQRL
SLLTELGRARLGGYQRPLREDDKALDLMFDHDGSVWMAGIPRRDDLLRLQDLLRDQGHQLSVSAHRPR*
AnnotationID:3688GeneID:3680
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative radical activating enzyme
Cell Localization:()
Synonyms:PA2726
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7363
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24505
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36305
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3680_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3680

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5883 PA2726_tr translation of PA2726 212 98.11 99.52 0 1088.0
164483 gb|AAG06114.1|AE004700_10 (AE004700) probable radical activating enzyme [Pseudomonas aeruginosa PAO1] 212 98.11 99.52 0 1088.0
GC ORFID: 46682How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2726Glimmer Score:
Start: 2453038Stop: 2453676
Length: 639
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2726 translation of PA2726Homolog Bit Score 423.0
Other Homologs: t_PA2726 (ORF: GLIMMER)
GC ORF Sequence
ATGGAACTGAGCCTGTCGCGGGTGCATTTCCCGGTGACCACCCTGGGCCCGGGACGGCGCCTGGGCATCTGG
TTCCAGGGCTGTAGCATCCGCTGCCCCGGCTGCATCTCCGCCGATACCTGGGGGCCGGGACGGCAGCGCATC
GCCCTGGCACGCCTGCTCGCCGACATCCAGCCATGGCTGGAGCAGGCCGAGGGCATCACCGTCTCCGGCGGC
GAACCCTTCGAGCAGTTCGCTGCCCTCCTCGCCCTGCTCGGCGAACTGCGCCAGCGCAGCCGCGCCGACATC
CTGGTCTACAGCGGCTACCCGCTGGAGCATCTGCACGTGCAACTGGAACAGGCCGCCGGGCTGATCGACGCG
CTGATCAGCGACCCCTACCAACAGCACGCCGAACAGAGCCTGGCCCTGCGCGGCAGCGACAACCAGCGCCTG
AGCCTGCTCACCGAACTCGGCCGCGCGCGCCTCGGCGGCTACCAGCGGCCACTGCGCGAAGACGACAAGGCC
CTCGACCTGATGTTCGACCACGACGGCAGCGTGTGGATGGCCGGCATCCCGCGCCGCGACGACCTGCTGCGG
CTACAGGACCTGCTGCGCGACCAGGGCCACCAACTTAGCGTCAGCGCCCATCGGCCGCGCTGA