ViewGene
Locus Name:
GeneID:
Location:

GeneID:368
TrivialName: PA14_54700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54700
PAO1 Ortholog Locus:PA0740
Sequence Length:1977
Protein Length:658
Start: 4851148
Stop: 4849172
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04129.1|AE004509_4 (AE004509) probable beta-lactamase [Pseudomonas aeruginosa PAO1]
Identities = 651/658 (98%), Positives = 656/658 (99%)
Sequence:
ATGAGCCGTCTGCTCGCACTCCTGGCGCTCGCCCCGCTACTCGCCGGCGCCGCCGAACCCTCCGCGTCCAAG
CCGCCCAGCGCCTTCACCGTCGAGGCCCAGCGGCGGGTCGAAGCGGAATTGCCGTTCGCCGACCGTGCCGAC
TTCGAGCGCGCCGAACGCGGCCTGATCCGGCGCCCGGAGCGGGTGCTCATCCGCAACCCCGACGGCAGCGTC
GCCTGGCAGCTCGGCGGCTACGACTTCCTCCTCGACGGCAAGCCCCGCGACAGCATCAATCCCAGCCTGCAA
CGCCAGGCCCTGCTCAATCTCAAGTACGGCCTGTTCGAGGTTGCCGAGGGTATCTACCAGGTGCGCGGCTTC
GACCTGGCCAACATCACCTTCATCCGCGGCGACAGCGGCTGGATCGTGGTCGACACCCTGACCACCCCGGCC
ACCGCCAGGGCGGCCTACGAGCTGGTCAGCCGCGAGCTGGGCGAGAGGCCGATCCGTACGGTGATCTACAGC
CACGCCCACGCCGATCACTTTGGAGGCGTGCGCGGTCTGGTCGAGCCGCAGCAGGTCGCCAGCGGCGCGGTG
CAGATCATCGCTCCGGCCGGCTTCATGGAGGCGGCGATCAAGGAGAACGTCCTGGCCGGCAACGCCATGATG
CGCCGCGCCACCTACCAGTACGGCACGCAACTGCCCAAGGGGCCGCAGGGGCAGGTCGACATGGCCATCGGC
AAGGGATTGGCGCGCGGACCGCTGAGCCTGCTGGCGCCGACCCGCCTGATCGAAGGCGAGGGCGAGGACCTG
GTGCTGGACGGCGTGCCGTTCACCTTCCAGAACACGCCGGGCACCGAGTCGCCGGCGGAGATGAACATCTGG
CTGCCGCGGCAGAAGGCCCTGCTGATGGCCGAGAACGTGGTCGGTACCCTGCACAACCTGTATACCCTGCGG
GGCGCCGAGGTACGTGATGCGCTGGGCTGGAGCAAGTACATCAACCAGGCGCTGCATCGTTTCGGCAGGCAG
GCCGAGGTGATGTTCGCAGTGCACAACTGGCCGCGCTGGGGCAACGCGGAGATCGTCGAGGTGCTGGAAAAG
CAGCGTGACCTGTACGGCTTCCTGCACGACCAGACCCTGCACCTGGCCAACCAGGGCGTGACCATCGGCCAG
GTGCACAACCGCCTGCGCCTGCCGCCCAGCCTCGACCAGGAATGGTACGACCGCGGCTACCACGGCTCGGTC
AGCCATAACGCACGGGCCGTGCTGAACCGCTACCTGGGCTACTACGACGGCAACCCGGCGAGCCTCGACCCG
CTCAGCCCGGAGGACTCGGCGGGCCGCTACGTGGAATACATGGGCGGCGCCGAGCGCCTGCTGGAGCAAGCG
CGGGCGTCGTACGCCAGGGGCGAGTACCGCTGGGTGGTCGAGGTGGTCAACAGGCTGGTCTTCGCCGAGCCG
GATAACCGGGCCGCGCGCGAGCTGCAGGCCGATGCCCTGGAGCAGCTCGGCTACCAGGCGGAGAACGCCGGC
TGGCGCAACAGCTACCTCAGCGCCGCCTACGAACTGCGCCACGGCGTACCGCGCGACCAGCCGACGATGAAG
GCCGGCAGCGCCGATGCCCTGGCGGCGATGGACACCGGCCTGCTGTTCGACTATCTCGGCGTGCGCCTGGAC
GCCGGCGCTGCGGAAGGCAAGGCGCTGAGCATCAACCTGCGCCTGCCGGACATCGGCGAGAACTACCTGCTG
GAACTGAAGAACTCGCACCTGAACAACCTGCGCGGCGTGCAGAGCGAGGACGCCGGGCAGACCGTGAGCATC
GACCGCGCCGATCTCAACCGGCTGCTGCTCAAGGAGGTATCGGCGGTACGCCTGGTCTTCGAGGGCAAACTG
AAGAGTTCCGGCAATCCGCTGTTGCTGGGGCAACTGTTCGGCATGCTCGGCGACTTCGACTTCTGGTTCGAT
ATCGTCACGCCGGCGGCGAAGTCCGAAGGCTGA
Translation:
MSRLLALLALAPLLAGAAEPSASKPPSAFTVEAQRRVEAELPFADRADFERAERGLIRRPERVLIRNPDGSV
AWQLGGYDFLLDGKPRDSINPSLQRQALLNLKYGLFEVAEGIYQVRGFDLANITFIRGDSGWIVVDTLTTPA
TARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMM
RRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIW
LPRQKALLMAENVVGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMFAVHNWPRWGNAEIVEVLEK
QRDLYGFLHDQTLHLANQGVTIGQVHNRLRLPPSLDQEWYDRGYHGSVSHNARAVLNRYLGYYDGNPASLDP
LSPEDSAGRYVEYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENAG
WRNSYLSAAYELRHGVPRDQPTMKAGSADALAAMDTGLLFDYLGVRLDAGAAEGKALSINLRLPDIGENYLL
ELKNSHLNNLRGVQSEDAGQTVSIDRADLNRLLLKEVSAVRLVFEGKLKSSGNPLLLGQLFGMLGDFDFWFD
IVTPAAKSEG*
AnnotationID:377GeneID:368
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:25
Gene Name:
Confidence Code:3
GeneProduct:possible beta-lactamase
Cell Localization:()
Synonyms:PA0740, yjcS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2015, Alkyl sulfatase and related hydrolases.
     CD-Length = 655 residues,  95.3% aligned
     Score = 1020 bits (2638), Expect = 0.0
pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.
     CD-Length = 190 residues, 100.0% aligned







   
Genomic Context:






   
Comment:


















    ReferenceID:739




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17881




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:368
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
614
                           PA0740_tr
                           translation of PA0740
                           658
                           98.93
                           99.69
                           0
                           3364.0
     

     
     
28953
                           gb|AAG04129.1|AE004509_4
                           (AE004509) probable beta-lactamase [Pseudomonas aeruginosa PAO1]
                           658
                           98.93
                           99.69
                           0
                           3364.0
     

     
     
28954
                           gb|AAF93948.1|
                           (AE004163) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           668
                           55.38
                           72.75
                           18
                           1937.0
     

     
     
28960
                           emb|CAE29782.1|
                           (BX572607) Beta-lactamase-like [Rhodopseudomonas palustris CGA009]
                           668
                           48.05
                           64.67
                           17
                           1565.0
     

     
     
28965
                           gb|AAN67659.1|AE016396_1
                           (AE016781) metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
                           670
                           47.91
                           61.79
                           29
                           1514.0
     

     






      

          
GC ORFID: 43370How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0740Glimmer Score: 

          
Start: 102759Stop: 104735

          
Length: 1977


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0740 translation of PA0740Homolog Bit Score 1300.0

          
Other Homologs:  t_PA0740 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGTCTGCTCGCACTCCTGGCGCTCGCCCCGCTACTCGCCGGCGCCGCCGAACCCTCCGCGTCCAAG 
CCGCCCAGCGCCTTCACCGTCGAGGCCCAGCGGCGGGTCGAAGCGGAATTGCCGTTCGCCGACCGTGCCGAC 
TTCGAGCGCGCCGAACGCGGCCTGATCCGGCGCCCGGAGCGGGTGCTCATCCGCAACCCCGACGGCAGCGTC 
GCCTGGCAGCTCGGCGGCTACGACTTCCTCCTCGACGGCAAGCCCCGCGACAGCATCAATCCCAGCCTGCAA 
CGCCAGGCCCTGCTCAATCTCAAGTACGGCCTGTTCGAGGTTGCCGAGGGTATCTACCAGGTGCGCGGCTTC 
GACCTGGCCAACATCACCTTCATCCGCGGCGACAGCGGCTGGATCGTGGTCGACACCCTGACCACCCCGGCC 
ACCGCCAGGGCGGCCTACGAGCTGGTCAGCCGCGAGCTGGGCGAGAGGCCGATCCGTACGGTGATCTACAGC 
CACGCCCACGCCGATCACTTTGGAGGCGTGCGCGGTCTGGTCGAGCCGCAGCAGGTCGCCAGCGGCGCGGTG 
CAGATCATCGCTCCGGCCGGCTTCATGGAGGCGGCGATCAAGGAGAACGTCCTGGCCGGCAACGCCATGATG 
CGCCGCGCCACCTACCAGTACGGCACGCAACTGCCCAAGGGGCCGCAGGGGCAGGTCGACATGGCCATCGGC 
AAGGGATTGGCGCGCGGACCGCTGAGCCTGCTGGCGCCGACCCGCCTGATCGAAGGCGAGGGCGAGGACCTG 
GTGCTGGACGGCGTGCCGTTCACCTTCCAGAACACGCCGGGCACCGAGTCGCCGGCGGAGATGAACATCTGG 
CTGCCGCGGCAGAAGGCCCTGCTGATGGCCGAGAACGTGGTCGGTACCCTGCACAACCTGTATACCCTGCGG 
GGCGCCGAGGTACGTGATGCGCTGGGCTGGAGCAAGTACATCAACCAGGCGCTGCATCGTTTCGGCAGGCAG 
GCCGAGGTGATGTTCGCAGTGCACAACTGGCCGCGCTGGGGCAACGCGGAGATCGTCGAGGTGCTGGAAAAG 
CAGCGTGACCTGTACGGCTTCCTGCACGACCAGACCCTGCACCTGGCCAACCAGGGCGTGACCATCGGCCAG 
GTGCACAACCGCCTGCGCCTGCCGCCCAGCCTCGACCAGGAATGGTACGACCGCGGCTACCACGGCTCGGTC 
AGCCATAACGCACGGGCCGTGCTGAACCGCTACCTGGGCTACTACGACGGCAACCCGGCGAGCCTCGACCCG 
CTCAGCCCGGAGGACTCGGCGGGCCGCTACGTGGAATACATGGGCGGCGCCGAGCGCCTGCTGGAGCAAGCG 
CGGGCGTCGTACGCCAGGGGCGAGTACCGCTGGGTGGTCGAGGTGGTCAACAGGCTGGTCTTCGCCGAGCCG 
GATAACCGGGCCGCGCGCGAGCTGCAGGCCGATGCCCTGGAGCAGCTCGGCTACCAGGCGGAGAACGCCGGC 
TGGCGCAACAGCTACCTCAGCGCCGCCTACGAACTGCGCCACGGCGTACCGCGCGACCAGCCGACGATGAAG 
GCCGGCAGCGCCGATGCCCTGGCGGCGATGGACACCGGCCTGCTGTTCGACTATCTCGGCGTGCGCCTGGAC 
GCCGGCGCTGCGGAAGGCAAGGCGCTGAGCATCAACCTGCGCCTGCCGGACATCGGCGAGAACTACCTGCTG 
GAACTGAAGAACTCGCACCTGAACAACCTGCGCGGCGTGCAGAGCGAGGACGCCGGGCAGACCGTGAGCATC 
GACCGCGCCGATCTCAACCGGCTGCTGCTCAAGGAGGTATCGGCGGTACGCCTGGTCTTCGAGGGCAAACTG 
AAGAGTTCCGGCAATCCGCTGTTGCTGGGGCAACTGTTCGGCATGCTCGGCGACTTCGACTTCTGGTTCGAT 
ATCGTCACGCCGGCGGCGAAGTCCGAAGGCTGA